Specimen-example.xml

General Specimen Example (id = "101")

  

<Specimen xmlns="http://hl7.org/fhir">
  <id value="101"/> 
  <!--   text>
    <status value="generated" />
    <div xmlns="http://www.w3.org/1999/xhtml">[Put rendering here]</div>
  </text>   -->
  
    
      
      
        
          
          
        
      
    
  
  <!--    a specimen identifier - e.g. assigned when the specimen was taken
     this is often not done    -->
  
    
    
  
  <!--   status is really about the specimen availability and includes the concepts available
   - The physical specimen is present and in good condition entered-in-error - The specimen
   was entered in error and therefore nullified. unavailable - There is no physical specimen
   because it is either lost, destroyed or consumed. unsatisfactory - The specimen cannot
   be used because of either a quality issue such as a broken container, contamination, or
   too old.   -->
  
  <!--   

  <text> <status value="generated"/> <div xmlns="http://www.w3.org/1999/xhtml"><p> <b> Generated Narrative with Details</b> </p> <p> <b> id</b> : 101</p> <p> <b> contained</b> : </p> <p> <b> identifier</b> : 23234352356</p> <p> <b> accessionIdentifier</b> : X352356</p> <p> <b> status</b> : available</p> <p> <b> type</b> : Venous blood specimen <span> (Details : {SNOMED CT code '122555007' = 'Venous blood specimen', given as 'Venous blood
           specimen'})</span> </p> <p> <b> subject</b> : <a> Peter Patient</a> </p> <p> <b> receivedTime</b> : 04/03/2011 7:03:00 AM</p> <p> <b> request</b> : <a> ProcedureRequest/example</a> </p> <h3> Collections</h3> <table> <tr> <td> -</td> <td> <b> Collector</b> </td> <td> <b> Collected[x]</b> </td> <td> <b> Quantity</b> </td> <td> <b> Method</b> </td> <td> <b> BodySite</b> </td> </tr> <tr> <td> *</td> <td> <a> Practitioner/example</a> </td> <td> 30/05/2011 6:15:00 AM</td> <td> 6 mL</td> <td> Line, Venous <span> (Details : {http://hl7.org/fhir/v2/0488 code 'LNV' = 'Line, Venous)</span> </td> <td> Right median cubital vein <span> (Details : {SNOMED CT code '49852007' = 'Median cubital vein', given as 'Structure of
               median cubital vein (body structure)'})</span> </td> </tr> </table> <h3> Containers</h3> <table> <tr> <td> -</td> <td> <b> Identifier</b> </td> <td> <b> Description</b> </td> <td> <b> Type</b> </td> <td> <b> Capacity</b> </td> <td> <b> SpecimenQuantity</b> </td> <td> <b> Additive[x]</b> </td> </tr> <tr> <td> *</td> <td> 48736-15394-75465</td> <td> Green Gel tube</td> <td> Vacutainer <span> (Details )</span> </td> <td> 10 mL</td> <td> 6 mL</td> <td> id: hep; Lithium/Li Heparin <span> (Details : {http://hl7.org/fhir/v3/EntityCode code 'HEPL' = 'Lithium/Li Heparin)</span> </td> </tr> </table> <p> <b> note</b> : Specimen is grossly lipemic</p> </div> </text> <contained> 
    <Substance> 
      <id value="hep"/> 
      <code> 
        <coding> 
          <system value="http://hl7.org/fhir/v3/EntityCode"/> 
          <code value="HEPL"/> 
        </coding> 
      </code> 
    </Substance> 
  </contained> 
  <identifier> 
    <!--    a specimen identifier - e.g. assigned when the specimen was taken this is often not

     done    -->
    <system value="http://ehr.acme.org/identifiers/collections"/> 
    <value value="23234352356"/> 
  </identifier> 
  <accessionIdentifier> 
    <system value="http://lab.acme.org/specimens/2011"/> 
    <value value="X352356"/> 
  </accessionIdentifier> 
  <status value="available"/> 
  <type> 
    <!--   
   Type is a loosely defined field because there is such a lot of variation in how it
   is used.

     is used.

   The principal variation is how much information that could be represented elsewhere
   is also 

     is also

   represented here. For instance, here's some possible types:
     lithium heparin plasma   (+ .container.additive) (e.g. SNOMED CT 446272009)
     transfusion bag of blood (+ container.type) 

     transfusion bag of blood (+ container.type)

     Peritoneal lavage        (+ collection.bodySite)
   If the type includes other fields, it would be normal not to populate the other fields

   Note that this practice is so widespread that it's pointless to try and stop it    -->
  
    
      
      
      
    
  
  
    
    
  
  <!--    accession identifier - e.g. assigned by the labaratory when it is received.
     This is common, unlike specimen identifier    -->
  
    
    
  
  
  
    

    <coding> 
      <system value="http://snomed.info/sct"/> 
      <code value="122555007"/> 
      <display value="Venous blood specimen"/> 
    </coding> 
  </type> 
  <subject> 
    <reference value="Patient/example"/> 
    <display value="Peter Patient"/> 
  </subject> 
  <receivedTime value="2011-03-04T07:03:00Z"/> 
  <request> 
    <!--    this points to the order that caused the sample to be drawn    -->
    <reference value="ProcedureRequest/example"/> 
  </request> 
  <collection> 
    <collector> 
      <!--    in practice, collecter is almost always recorded    -->
      
    
    

      <reference value="Practitioner/example"/> 
    </collector> 
    <!--    the time of collection is usually required. Usually a point in time, but can be a period
     

      (collectedPeriod) if it's a timed collection (e.g. a 24 hour urine)    -->
    
    
      
      

    <collectedDateTime value="2011-05-30T06:15:00Z"/> 
    <quantity> 
      <value value="6"/> 
      <unit value="mL"/> 
      <!--    e.g. full    -->
    

    </quantity> 
    <!--    method is usually implied by type    -->
    
      
        
        
      
    
  
  
    <!--    

    <method> 
      <coding> 
        <system value="http://hl7.org/fhir/v2/0488"/> 
        <code value="LNV"/> 
      </coding> 
    </method> 
    <!--    bodysite is usually implied by type too its here to demonstrate its usage to indicating
     the draw site in this case   -->
    <bodySite> 
      <coding> 
        <system value="http://snomed.info/sct"/> 
        <code value="49852007"/> 
        <display value="Structure of median cubital vein (body structure)"/> 
      </coding> 
      <text value="Right median cubital vein"/> 
    </bodySite> 
  </collection> 
  <!--   
      the container identifier is not the same as the specimen identifier
      usually, it is pre-printed/implanted etc.on the container prior to 
      use. It might a RFID in the container, or it might be a UDI 

      usually, it is pre-printed/implanted etc.on the container prior to
      use. It might a RFID in the container, or it might be a UDI

      (http://www.fda.gov/MedicalDevices/DeviceRegulationandGuidance/UniqueDeviceIdentification/)
     

       -->
    
      
      
    
    
    
      
      
    
    
      
      
    
    <!--    if there's only one container, then this value is the same 

    <container> 
  <identifier> 
    <!--    this is a serial number off the tube - there's no context such as a system    -->
    <value value="48736-15394-75465"/> 
  </identifier> 
  <description value="Green Gel tube"/> 
  <type> 
    <!--    again, this might easily be used to cover additives and capacity as well    -->
    <text value="Vacutainer"/> 
  </type> 
  <capacity> 
    <value value="10"/> 
    <unit value="mL"/> 
  </capacity> 
  <!--    if there's only one container, then this value is the same
     as .collection.quantity (usually). This is for when there is more
     than one container    -->
    
      
      
    
    
      
    
  

  <specimenQuantity> 
    <value value="6"/> 
    <unit value="mL"/> 
  </specimenQuantity> 
  <additiveReference> 
    <reference value="#hep"/> 
  </additiveReference> 
  </container> 
  <note> 
    <text value="Specimen is grossly lipemic"/> 
  </note> 


</

Specimen

>