Bacterial Isolate from Stool sample (id = "isolate")

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    <!--   text>
    <status value="generated" />
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  (Details : {SNOMED CT code '429951000124103' = 'Bacterial isolate specimen (specimen)',
           given as 'Bacterial isolate specimen'})(Details : {http://terminology.hl7.org/CodeSystem/v2-0488 code 'BAP' = 'Plates, Blood
               Agar)
    
      
      
        <!--    accession identifier - e.g. assigned by the labaratory when it is received.
     This is common, unlike specimen identifier    -->
        
        
      
      
      
        <!--   
   Type is a loosely defined field because there is such a lot of variation in how it
         is used.

<Specimen xmlns="http://hl7.org/fhir">
  <id value="isolate"/> 
        <!--   text>
    <status value="generated" />
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  <text> <status value="generated"/> <div xmlns="http://www.w3.org/1999/xhtml"><p> <b> Generated Narrative: Specimen</b> <a name="isolate"> </a> </p> <div style="display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border:

       1px solid #8da1b4; border-radius: 5px; line-height: 60%"><p style="margin-bottom: 0px">Resource Specimen &quot;isolate&quot; </p> </div> <p> <b> accessionIdentifier</b> : id: X352356-ISO1</p> <p> <b> status</b> : available</p> <p> <b> type</b> : Bacterial isolate specimen <span style="background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki"> (<a href="https://browser.ihtsdotools.org/">SNOMED CT</a> #429951000124103)</span> </p> <p> <b> subject</b> : <a href="patient-example.html">Patient/example</a>  &quot;Peter CHALMERS&quot;</p> <p> <b> receivedTime</b> : 2015-08-18T07:03:00Z</p> <p> <b> parent</b> : <a name="stool"> </a> </p> <blockquote> <p/>  <p> <a name="stool"> </a> </p> <p> <b> accessionIdentifier</b> : id: X352356</p> <p> <b> status</b> : unavailable</p> <p> <b> type</b> : Stool specimen <span style="background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki"> (<a href="https://browser.ihtsdotools.org/">SNOMED CT</a> #119339001)</span> </p> <p> <b> subject</b> : <a href="patient-example.html">Patient/example</a>  &quot;Peter CHALMERS&quot;</p> <p> <b> receivedTime</b> : 2015-08-16T07:03:00Z</p> <h3> Collections</h3> <table class="grid"><tr> <td> -</td> <td> <b> Collector</b> </td> <td> <b> Collected[x]</b> </td> <td> <b> Method</b> </td> </tr> <tr> <td> *</td> <td> <span> : Patient</span> </td> <td> <span title="    the time of collection is usually required. Usually a point in time, but can
               be a period 
      (collectedPeriod) if it's a timed collection (e.g. a 24 hour urine)    ">2011-08-16T06:15:00Z</span> </td> <td> <span title="    method is usually implied by type    ">Line, Venous <span style="background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki"> (<a href="http://terminology.hl7.org/5.1.0/CodeSystem-v2-0488.html">specimenCollectionMethod</a> #LNV)</span> </span> </td> </tr> </table> </blockquote> <p> <b> role</b> : Patient <span style="background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki"> ([not stated]#p)</span> </p> <h3> Collections</h3> <table class="grid"><tr> <td> -</td> <td> <b> Collector</b> </td> <td> <b> Collected[x]</b> </td> <td> <b> Method</b> </td> </tr> <tr> <td> *</td> <td> <a href="practitioner-example-f202-lm.html">Practitioner/f202</a>  &quot;Luigi Maas&quot;</td> <td> <span title="    the time of collection is usually required. Usually a point in time, but can
             be a period 
      (collectedPeriod) if it's a timed collection (e.g. a 24 hour urine)    ">2015-08-16T07:03:00Z</span> </td> <td> <span title="    method is usually implied by type    ">Plates, Blood Agar <span style="background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki"> (<a href="http://terminology.hl7.org/5.1.0/CodeSystem-v2-0488.html">specimenCollectionMethod</a> #BAP)</span> </span> </td> </tr> </table> <p> <b> note</b> : Patient dropped off specimen</p> </div> </text> <contained> 
    <Specimen>       <id value="stool"/>       <accessionIdentifier>             <!--    accession identifier - e.g. assigned by the labaratory when it is received.
     This is common, unlike specimen identifier    -->
        <system value="http://lab.acme.org/specimens/2015"/>         <value value="X352356"/>       </accessionIdentifier>       <status value="unavailable"/>       <type>             <!--   
   Type is a loosely defined field because there is such a lot of variation in
         how it is used.

   The principal variation is how much information that could be represented elsewhere
         is also
   represented here. For instance, here's some possible types:
     lithium heparin plasma   (+ .container.additive) (e.g. SNOMED CT 446272009)
     transfusion bag of blood (+ container.type)
     Peritoneal lavage        (+ collection.bodySite)
   If the type includes other fields, it would be normal not to populate the other fields

   Note that this practice is so widespread that it's pointless to try and stop it 
   -->
        
          
          
          
        
      
      
        
      
      
      
        
          
          
        
        <!--      the time of collection is usually required. Usually a point in time, but can be a
         period 
      (collectedPeriod) if it's a timed collection (e.g. a 24 hour urine)      -->
        
        
        
          
            
            
          
        
      
    
  
  
    
    
  
  
  
    
      
      
      
    
  
  
    
  
  
  
    
  
  
    
      
      
    
    <!--      the time of collection is usually required. Usually a point in time, but can be a
     period 
      (collectedPeriod) if it's a timed collection (e.g. a 24 hour urine)      -->
    
    
    
      
        
        
      
    
  
  
    
  

         is also
   represented here. For instance, here's some possible types:
     lithium heparin plasma   (+ .container.additive) (e.g. SNOMED CT 446272009)
     transfusion bag of blood (+ container.type)
     Peritoneal lavage        (+ collection.bodySite)
   If the type includes other fields, it would be normal not to populate the other
         fields
   Note that this practice is so widespread that it's pointless to try and stop
         it 
   -->
        <coding>           <system value="http://snomed.info/sct"/>           <code value="119339001"/>           <display value="Stool specimen"/>         </coding>       </type>       <subject>         <reference value="Patient/example"/>       </subject>       <receivedTime value="2015-08-16T07:03:00Z"/>       <collection>         <collector>               <!--      in practice, collecter is almost always recorded      -->          <display value="Patient"/>         </collector>             <!--      the time of collection is usually required. Usually a point in time, but can

         be a period 
      (collectedPeriod) if it's a timed collection (e.g. a 24 hour urine)      -->
        <collectedDateTime value="2011-08-16T06:15:00Z"/>             <!--      method is usually implied by type      -->        <method>           <coding>             <system value="http://terminology.hl7.org/CodeSystem/v2-0488"/>             <code value="LNV"/>           </coding>         </method>       </collection>     </Specimen>   </contained>   <accessionIdentifier>     <system value="http://lab.acme.org/specimens/2011"/>     <value value="X352356-ISO1"/>   </accessionIdentifier>   <status value="available"/>   <type>     <coding>       <system value="http://snomed.info/sct"/>       <code value="429951000124103"/>       <display value="Bacterial isolate specimen"/>     </coding>   </type>   <subject>     <reference value="Patient/example"/>   </subject>   <receivedTime value="2015-08-18T07:03:00Z"/>   <parent>     <reference value="#stool"/>   </parent>   <role>     <coding>             <code value="p"/>       <display value="Patient"/>     </coding>   </role>   <collection>     <collector>           <!--      in practice, collecter is almost always recorded      -->      <reference value="Practitioner/f202"/>     </collector>         <!--      the time of collection is usually required. Usually a point in time, but can

     be a period 
      (collectedPeriod) if it's a timed collection (e.g. a 24 hour urine)      -->
    <collectedDateTime value="2015-08-16T07:03:00Z"/>         <!--      method is usually implied by type      -->    <method>       <coding>         <system value="http://terminology.hl7.org/CodeSystem/v2-0488"/>         <code value="BAP"/>       </coding>     </method>   </collection>   <note>     <text value="Patient dropped off specimen"/>   </note> 


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Specimen

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