Release 4B 5

This page is part of the FHIR Specification (v4.3.0: R4B (v5.0.0: R5 - STU ). The This is the current published version which supercedes in it's permanent home (it will always be available at this version is 5.0.0 . URL). For a full list of available versions, see the Directory of published versions . Page versions: R5 R4B R5 R4B R4 R3 R2

Specimen-example-isolate.json

Example Specimen/isolate (JSON)

Orders and Observations Work Group Maturity Level : N/A Standards Status : Informative Compartments : Device , Patient , Practitioner

Raw JSON ( canonical form + also see JSON Format Specification )

Bacterial Isolate from Stool sample 

{
  "resourceType": "Specimen",
  "id": "isolate",
  "text": {
    "status": "generated",
    "div": "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Generated Narrative</b></p><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\">Resource &quot;isolate&quot; </p></div><p><b>accessionIdentifier</b>: id: X352356-ISO1</p><p><b>status</b>: available</p><p><b>type</b>: Bacterial isolate specimen <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"https://browser.ihtsdotools.org/\">SNOMED CT</a>#429951000124103)</span></p><p><b>subject</b>: <a href=\"patient-example.html\">Patient/example</a> &quot;Peter CHALMERS&quot;</p><p><b>receivedTime</b>: 2015-08-18T07:03:00Z</p><p><b>parent</b>: <a name=\"stool\"> </a></p><blockquote><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\">Resource &quot;stool&quot; </p></div><p><b>accessionIdentifier</b>: id: X352356</p><p><b>status</b>: unavailable</p><p><b>type</b>: Stool specimen <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"https://browser.ihtsdotools.org/\">SNOMED CT</a>#119339001)</span></p><p><b>subject</b>: <a href=\"patient-example.html\">Patient/example</a> &quot;Peter CHALMERS&quot;</p><p><b>receivedTime</b>: 2015-08-16T07:03:00Z</p><h3>Collections</h3><table class=\"grid\"><tr><td>-</td><td><b>Collector</b></td><td><b>Collected[x]</b></td><td><b>Method</b></td></tr><tr><td>*</td><td><span>: Patient</span></td><td>2011-08-16T06:15:00Z</td><td>Line, Venous <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"http://terminology.hl7.org/3.1.0/CodeSystem-v2-0488.html\">specimenCollectionMethod</a>#LNV)</span></td></tr></table></blockquote><h3>Collections</h3><table class=\"grid\"><tr><td>-</td><td><b>Collector</b></td><td><b>Collected[x]</b></td><td><b>Method</b></td></tr><tr><td>*</td><td><a href=\"practitioner-f202.html\">Practitioner/f202</a> &quot;Luigi Maas&quot;</td><td>2015-08-16T07:03:00Z</td><td>Plates, Blood Agar <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"http://terminology.hl7.org/3.1.0/CodeSystem-v2-0488.html\">specimenCollectionMethod</a>#BAP)</span></td></tr></table><p><b>note</b>: Patient dropped off specimen</p></div>"

  "resourceType" : "Specimen",
  "id" : "isolate",
  "text" : {
    "status" : "generated",
    "div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Generated Narrative: Specimen</b><a name=\"isolate\"> </a></p><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\">Resource Specimen &quot;isolate&quot; </p></div><p><b>accessionIdentifier</b>: id:\u00a0X352356-ISO1</p><p><b>status</b>: available</p><p><b>type</b>: Bacterial isolate specimen <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"https://browser.ihtsdotools.org/\">SNOMED CT</a>#429951000124103)</span></p><p><b>subject</b>: <a href=\"patient-example.html\">Patient/example</a> &quot;Peter CHALMERS&quot;</p><p><b>receivedTime</b>: 2015-08-18T07:03:00Z</p><p><b>parent</b>: <a name=\"stool\"> </a></p><blockquote><p/><p><a name=\"stool\"> </a></p><p><b>accessionIdentifier</b>: id:\u00a0X352356</p><p><b>status</b>: unavailable</p><p><b>type</b>: Stool specimen <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"https://browser.ihtsdotools.org/\">SNOMED CT</a>#119339001)</span></p><p><b>subject</b>: <a href=\"patient-example.html\">Patient/example</a> &quot;Peter CHALMERS&quot;</p><p><b>receivedTime</b>: 2015-08-16T07:03:00Z</p><h3>Collections</h3><table class=\"grid\"><tr><td>-</td><td><b>Collector</b></td><td><b>Collected[x]</b></td><td><b>Method</b></td></tr><tr><td>*</td><td><span>: Patient</span></td><td><span title=\"    the time of collection is usually required. Usually a point in time, but can be a period \n      (collectedPeriod) if it's a timed collection (e.g. a 24 hour urine)    \">2011-08-16T06:15:00Z</span></td><td><span title=\"    method is usually implied by type    \">Line, Venous <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"http://terminology.hl7.org/5.1.0/CodeSystem-v2-0488.html\">specimenCollectionMethod</a>#LNV)</span></span></td></tr></table></blockquote><p><b>role</b>: Patient <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> ([not stated]#p)</span></p><h3>Collections</h3><table class=\"grid\"><tr><td>-</td><td><b>Collector</b></td><td><b>Collected[x]</b></td><td><b>Method</b></td></tr><tr><td>*</td><td><a href=\"practitioner-example-f202-lm.html\">Practitioner/f202</a> &quot;Luigi Maas&quot;</td><td><span title=\"    the time of collection is usually required. Usually a point in time, but can be a period \n      (collectedPeriod) if it's a timed collection (e.g. a 24 hour urine)    \">2015-08-16T07:03:00Z</span></td><td><span title=\"    method is usually implied by type    \">Plates, Blood Agar <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"http://terminology.hl7.org/5.1.0/CodeSystem-v2-0488.html\">specimenCollectionMethod</a>#BAP)</span></span></td></tr></table><p><b>note</b>: Patient dropped off specimen</p></div>"

  },
  "contained": [
    {
      "resourceType": "Specimen",
      "id": "stool",
      "accessionIdentifier": {
        "system": "http://lab.acme.org/specimens/2015",
        "value": "X352356"
      },
      "status": "unavailable",
      "type": {
        "coding": [
          {
            "system": "http://snomed.info/sct",
            "code": "119339001",
            "display": "Stool specimen"
          }
        ]
      },
      "subject": {
        "reference": "Patient/example"

  "contained" : [{
    "resourceType" : "Specimen",
    "id" : "stool",
    "accessionIdentifier" : {
      "system" : "http://lab.acme.org/specimens/2015",
      "value" : "X352356"
    },
    "status" : "unavailable",
    "type" : {
      "coding" : [{
        "system" : "http://snomed.info/sct",
        "code" : "119339001",
        "display" : "Stool specimen"
      }]
    },
    "subject" : {
      "reference" : "Patient/example"
    },
    "receivedTime" : "2015-08-16T07:03:00Z",
    "collection" : {
      "collector" : {
        "display" : "Patient"

      },
      "receivedTime": "2015-08-16T07:03:00Z",
      "collection": {
        "collector": {
          "display": "Patient"
        },
        "collectedDateTime": "2011-08-16T06:15:00Z",
        "method": {
          "coding": [
            {
              "system": "http://terminology.hl7.org/CodeSystem/v2-0488",
              "code": "LNV"
            }
          ]
        }

      "collectedDateTime" : "2011-08-16T06:15:00Z",
      "method" : {
        "coding" : [{
          "system" : "http://terminology.hl7.org/CodeSystem/v2-0488",
          "code" : "LNV"
        }]

      }
    }
  ],
  "accessionIdentifier": {
    "system": "http://lab.acme.org/specimens/2011",
    "value": "X352356-ISO1"

  }],
  "accessionIdentifier" : {
    "system" : "http://lab.acme.org/specimens/2011",
    "value" : "X352356-ISO1"

  },
  "status": "available",
  "type": {
    "coding": [
      {
        "system": "http://snomed.info/sct",
        "code": "429951000124103",
        "display": "Bacterial isolate specimen"
      }
    ]

  "status" : "available",
  "type" : {
    "coding" : [{
      "system" : "http://snomed.info/sct",
      "code" : "429951000124103",
      "display" : "Bacterial isolate specimen"
    }]

  },
  "subject": {
    "reference": "Patient/example"

  "subject" : {
    "reference" : "Patient/example"

  },
  "receivedTime": "2015-08-18T07:03:00Z",
  "parent": [
    {
      "reference": "#stool"
    }
  ],
  "collection": {
    "collector": {
      "reference": "Practitioner/f202"

  "receivedTime" : "2015-08-18T07:03:00Z",
  "parent" : [{
    "reference" : "#stool"
  }],
  "role" : [{
    "coding" : [{
      "code" : "p",
      "display" : "Patient"
    }]
  }],
  "collection" : {
    "collector" : {
      "reference" : "Practitioner/f202"

    },
    "collectedDateTime": "2015-08-16T07:03:00Z",
    "method": {
      "coding": [
        {
          "system": "http://terminology.hl7.org/CodeSystem/v2-0488",
          "code": "BAP"
        }
      ]

    "collectedDateTime" : "2015-08-16T07:03:00Z",
    "method" : {
      "coding" : [{
        "system" : "http://terminology.hl7.org/CodeSystem/v2-0488",
        "code" : "BAP"
      }]

    }
  },
  "note": [
    {
      "text": "Patient dropped off specimen"
    }
  ]

  "note" : [{
    "text" : "Patient dropped off specimen"
  }]

}

Usage note: every effort has been made to ensure that the examples are correct and useful, but they are not a normative part of the specification.