Release 4 5

This page is part of the FHIR Specification (v4.0.1: R4 (v5.0.0: R5 - Mixed Normative and STU ) ). This is the current published version in it's permanent home (it will always be available at this URL). The current version which supercedes this version is 5.0.0 . For a full list of available versions, see the Directory of published versions . Page versions: R5 R4B R4 R3

Sequence-example-pgx-1

Example MolecularSequence/example-pgx-1 (Narrative)

Clinical Genomics Work Group Maturity Level : N/A Standards Status : Informative Compartments : Patient

This is the narrative for the resource. See also the XML , JSON or Turtle format. This example conforms to the profile MolecularSequence .

Generated Narrative with Details Narrative: MolecularSequence

id : example-pgx-1

Resource MolecularSequence "example-pgx-1"

type : dna

coordinateSystem subject : 0 Patient/example "Peter CHALMERS"

patient relative

coordinateSystem : Patient/example 0-based interval counting ( LOINC #LA30100-4)

ReferenceSeqs StartingSequences

- Orientation Sequence[x] ReferenceSeqId WindowStart Strand WindowEnd WindowStart Orientation WindowEnd Strand
* sense NG_007726.3 (Details : {http://www.ncbi.nlm.nih.gov/nuccore code 'NG_007726.3' = 'NG_007726.3) (nuccore#NG_007726.3) watson 55227970 55227970 55227980 55227980 sense watson

Variants Edits

Target Haplotype Observation
- Start End ObservedAllele ReferenceAllele ReplacementSequence VariantPointer ReplacedSequence
* 55227976 55227977 G T

 

Other examples that reference this example:

  • Provenance/CWL Workflow

    •  

    Usage note: every effort has been made to ensure that the examples are correct and useful, but they are not a normative part of the specification.