Release 4B 5

This page is part of the FHIR Specification (v4.3.0: R4B (v5.0.0: R5 - STU ). The This is the current published version which supercedes in it's permanent home (it will always be available at this version is 5.0.0 . URL). For a full list of available versions, see the Directory of published versions . Page versions: R5 R4B R5 R4B R4 R3

Sequence-example-TPMT-one.xml

Example MolecularSequence/example-TPMT-one (XML)

Clinical Genomics Work Group Maturity Level : N/A Standards Status : Informative Compartments : Patient

Raw XML ( canonical form + also see XML Format Specification )

Jump past Narrative

Example of a TPMT SNP data that support a haplotype observation (id = "example-TPMT-one") 

<?xml version="1.0" encoding="UTF-8"?>


    
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<MolecularSequence xmlns="http://hl7.org/fhir">
    <id value="example-TPMT-one"/> 
    <text> <status value="generated"/> <div xmlns="http://www.w3.org/1999/xhtml"><p> <b> Generated Narrative: MolecularSequence</b> <a name="example-TPMT-one"> </a> </p> <div style="display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border:
       1px solid #8da1b4; border-radius: 5px; line-height: 60%"><p style="margin-bottom: 0px">Resource MolecularSequence &quot;example-TPMT-one&quot; </p> </div> <p> <b> type</b> : dna</p> <p> <b> subject</b> : <a href="patient-example.html">Patient/example</a>  &quot;Peter CHALMERS&quot;</p> <blockquote> <p> <b> relative</b> </p> <p> <b> coordinateSystem</b> : 1-based character counting <span style="background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki"> (<a href="https://loinc.org/">LOINC</a> #LA30102-0)</span> </p> <h3> StartingSequences</h3> <table class="grid"><tr> <td> -</td> <td> <b> Sequence[x]</b> </td> <td> <b> WindowStart</b> </td> <td> <b> WindowEnd</b> </td> <td> <b> Strand</b> </td> </tr> <tr> <td> *</td> <td> NT_007592.15 <span style="background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki"> (nuccore#NT_007592.15)</span> </td> <td> 18130918</td> <td> 18143955</td> <td> watson</td> </tr> </table> <h3> Edits</h3> <table class="grid"><tr> <td> -</td> <td> <b> Start</b> </td> <td> <b> End</b> </td> <td> <b> ReplacementSequence</b> </td> <td> <b> ReplacedSequence</b> </td> </tr> <tr> <td> *</td> <td> 18139214</td> <td> 18139214</td> <td> A</td> <td> G</td> </tr> </table> </blockquote> </div> </text> <type value="dna"/> 
    <subject>         <reference value="Patient/example"/>     </subject>     <relative>       <coordinateSystem>           <coding>               <system value="http://loinc.org"/>               <code value="LA30102-0"/>               <display value="1-based character counting"/>           </coding>       </coordinateSystem>       <startingSequence>           <sequenceCodeableConcept>             <coding>               <system value="http://www.ncbi.nlm.nih.gov/nuccore"/>               <code value="NT_007592.15"/>             </coding>           </sequenceCodeableConcept>           <windowStart value="18130918"/>           <windowEnd value="18143955"/>           <strand value="watson"/>       </startingSequence>       <edit>           <start value="18139214"/>           <end value="18139214"/>           <replacementSequence value="A"/>           <replacedSequence value="G"/>       </edit>     </relative> 


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MolecularSequence

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Usage note: every effort has been made to ensure that the examples are correct and useful, but they are not a normative part of the specification.