Provenance example MolecularSequence for cwl CWL workflow project

@prefix fhir: <http://hl7.org/fhir/> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .

# - resource -------------------------------------------------------------------

<http://hl7.org/fhir/Provenance/example-cwl> a fhir:Provenance;
  fhir:nodeRole fhir:treeRoot;
  fhir:Resource.id [ fhir:value "example-cwl"];
  fhir:DomainResource.text [
     fhir:Narrative.status [ fhir:value "generated" ];
     fhir:Narrative.div "<div xmlns=\"http://www.w3.org/1999/xhtml\">\n			<p>\n				<b>Generated Narrative with Details</b>\n			</p><p>\n				<b>id</b>: cwl-example</p><p>\n				<b>target</b>: <a href=\"http://build.fhir.org/sequence-example-pgx-1.html\">MolecularSequence/example-pgx-1</a>\n			</p><p>\n				<b>period</b>: Nov 30, 2016 --&gt; (ongoing)</p><p>\n				<b>recorded</b>: Dec 1, 2016 8:12:14 AM</p><p>\n				<b>reason</b>: profiling Short Tandem Repeats (STRs) from high throughput sequencing data. (Details:\n         [not stated] code null = 'null', stated as 'profiling Short Tandem Repeats (STRs) from\n         high throughput sequencing data.')</p>\n			<h3>Agents</h3>\n			<table>\n				<tr>\n					<td>-</td>\n					<td>\n						<b>Role</b>\n					</td>\n					<td>\n						<b>Who</b>\n					</td>\n				</tr>\n				<tr>\n					<td>*</td>\n					<td>Author (Details: http://hl7.org/fhir/provenance-participant-role code author = 'Author',\n             stated as 'null')</td>\n					<td>\n						<a href=\"http://build.fhir.org/patient-example.html\">Patient/example</a>\n					</td>\n				</tr>\n			</table>\n			<h3>Entities</h3>\n			<table>\n				<tr>\n					<td>-</td>\n					<td>\n						<b>Role</b>\n					</td>\n					<td>\n						<b>Reference</b>\n					</td>\n				</tr>\n				<tr>\n					<td>*</td>\n					<td>source</td>\n					<td>\n						<a href=\"https://github.com/common-workflow-language/workflows/blob/master/workflows/lobSTR/lobSTR-workflow.cwl\">CWL example</a>\n					</td>\n				</tr>\n			</table>\n		</div>"
  ];
  fhir:Provenance.target [
     fhir:index 0;
     fhir:link <http://hl7.org/fhir/MolecularSequence/example-pgx-1>;
     fhir:Reference.reference [ fhir:value "MolecularSequence/example-pgx-1" ]
  ];
  fhir:Provenance.occurredPeriod [
     fhir:Period.start [ fhir:value "2016-11-30"^^xsd:date ]
  ];
  fhir:Provenance.recorded [ fhir:value "2016-12-01T08:12:14+10:00"^^xsd:dateTime];
  fhir:Provenance.reason [
     fhir:index 0;
     fhir:CodeableConcept.text [ fhir:value "profiling Short Tandem Repeats (STRs) from high throughput sequencing data." ]
  ];
  fhir:Provenance.agent [
     fhir:index 0;
     fhir:Provenance.agent.type [
       fhir:CodeableConcept.coding [
         fhir:index 0;
         fhir:Coding.system [ fhir:value "http://terminology.hl7.org/CodeSystem/v3-ParticipationType" ];
         fhir:Coding.code [ fhir:value "AUT" ]
       ]
     ];
     fhir:Provenance.agent.who [
       fhir:link <http://hl7.org/fhir/Patient/example>;
       fhir:Reference.reference [ fhir:value "Patient/example" ]

[a fhir:Provenance ;
  fhir:nodeRole fhir:treeRoot ;
  fhir:id [ fhir:v "example-cwl"] ; # 
  fhir:text [
     fhir:status [ fhir:v "generated" ] ;
     fhir:div "<div xmlns=\"http://www.w3.org/1999/xhtml\">\n			<p>\n				<b>Generated Narrative with Details</b>\n			</p><p>\n				<b>id</b>: cwl-example</p><p>\n				<b>target</b>: <a href=\"sequence-example-pgx-1.html\">MolecularSequence/example-pgx-1</a>\n			</p><p>\n				<b>period</b>: Nov 30, 2016 --&gt; (ongoing)</p><p>\n				<b>recorded</b>: Dec 1, 2016 8:12:14 AM</p><p>\n				<b>reason</b>: profiling Short Tandem Repeats (STRs) from high throughput sequencing data. (Details:\n         [not stated] code null = 'null', stated as 'profiling Short Tandem Repeats (STRs) from\n         high throughput sequencing data.')</p>\n			<h3>Agents</h3>\n			<table>\n				<tr>\n					<td>-</td>\n					<td>\n						<b>Role</b>\n					</td>\n					<td>\n						<b>Who</b>\n					</td>\n				</tr>\n				<tr>\n					<td>*</td>\n					<td>Author (Details: http://hl7.org/fhir/provenance-participant-role code author = 'Author',\n             stated as 'null')</td>\n					<td>\n						<a href=\"patient-example.html\">Patient/example</a>\n					</td>\n				</tr>\n			</table>\n			<h3>Entities</h3>\n			<table>\n				<tr>\n					<td>-</td>\n					<td>\n						<b>Role</b>\n					</td>\n					<td>\n						<b>Reference</b>\n					</td>\n				</tr>\n				<tr>\n					<td>*</td>\n					<td>source</td>\n					<td>\n						<a href=\"https://github.com/common-workflow-language/workflows/blob/master/workflows/lobSTR/lobSTR-workflow.cwl\">CWL example</a>\n					</td>\n				</tr>\n			</table>\n		</div>"
  ] ; # 
  fhir:target ( [
     fhir:reference [ fhir:v "MolecularSequence/example-pgx-1/_history/1" ]
  ] ) ; # 
  fhir:occurred [
     a fhir:Period ;
     fhir:start [ fhir:v "2016-11-30"^^xsd:date ]
  ] ; # 
  fhir:recorded [ fhir:v "2016-12-01T08:12:14+10:00"^^xsd:dateTime] ; # 
  fhir:activity [
     fhir:coding ( [
       fhir:system [ fhir:v "http://terminology.hl7.org/CodeSystem/v3-DataOperation"^^xsd:anyURI ] ;
       fhir:code [ fhir:v "CREATE" ] ;
       fhir:display [ fhir:v "create" ]
     ] ) ;
     fhir:text [ fhir:v "profiling Short Tandem Repeats (STRs) from high throughput sequencing data." ]
  ] ; # 
  fhir:agent ( [
     fhir:type [
       fhir:coding ( [
         fhir:system [ fhir:v "http://terminology.hl7.org/CodeSystem/v3-ParticipationType"^^xsd:anyURI ] ;
         fhir:code [ fhir:v "AUT" ]
       ] )
     ] ;
     fhir:who [
       fhir:reference [ fhir:v "Patient/example" ]

     ]
  ];
  fhir:Provenance.entity [
     fhir:index 0;
     fhir:Provenance.entity.role [ fhir:value "source" ];
     fhir:Provenance.entity.what [
       fhir:Reference.identifier [
         fhir:Identifier.type [
           fhir:CodeableConcept.coding [
             fhir:index 0;
             fhir:Coding.system [ fhir:value "https://github.com/common-workflow-language/workflows" ];
             fhir:Coding.code [ fhir:value "CWL" ];
             fhir:Coding.display [ fhir:value "lobSTR" ]
           ]
         ];
         fhir:Identifier.value [ fhir:value "https://github.com/common-workflow-language/workflows/blob/master/workflows/lobSTR/lobSTR-workflow.cwl" ]

  ] ) ; # 
  fhir:entity ( [
     fhir:role [ fhir:v "source" ] ;
     fhir:what [
       fhir:identifier [
         fhir:type [
           fhir:coding ( [
             fhir:system [ fhir:v "https://github.com/common-workflow-language/workflows"^^xsd:anyURI ] ;
             fhir:code [ fhir:v "CWL" ] ;
             fhir:display [ fhir:v "lobSTR" ]
           ] )
         ] ; #  \n    <reference value=\"https:\/\/github.com\/common-workflow-language\/workflows\/blob\/master\/workflows\/lobSTR\/lobSTR-workflow.cwl\"\/>\n  removed this as it throws warnings in build. Could not figure out what to replace it with.\n   
         fhir:value [ fhir:v "https://github.com/common-workflow-language/workflows/blob/master/workflows/lobSTR/lobSTR-workflow.cwl" ]

       ]
     ]
  ] .

<http://hl7.org/fhir/MolecularSequence/example-pgx-1> a fhir:MolecularSequence .

<http://hl7.org/fhir/Patient/example> a fhir:Patient .

# - ontology header ------------------------------------------------------------

<http://hl7.org/fhir/Provenance/example-cwl.ttl> a owl:Ontology;
  owl:imports fhir:fhir.ttl;
  owl:versionIRI <http://build.fhir.org/Provenance/example-cwl.ttl> .

  ] )] . # 


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