Diagnostics
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| Orders and Observations Work Group | Maturity Level : N/A | Standards Status : Informative | Compartments : Device , Encounter , Patient , Practitioner , RelatedPerson |
Raw JSON ( canonical form + also see JSON Format Specification )
An example of a herd screening ELISA assay for Mycoplasmal Pneumonia in Pigs.
{
"resourceType": "Observation",
"id": "herd1",
"text": {
"status": "generated",
"div": "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Generated Narrative with Details</b></p><p><b>id</b>: herd1</p><p><b>status</b>: final</p><p><b>category</b>: Laboratory <span>(Details : {http://terminology.hl7.org/CodeSystem/observation-category code 'laboratory' = 'Laboratory', given as 'Laboratory'})</span></p><p><b>code</b>: Mycoplasma hyopneumoniae - MHP <span>(Details : {LOINC code '80219-9' = 'Mycoplasma hyopneumoniae Ab sample/Positive control in Serum by Immunoassay', given as 'Mycoplasma hyopneumoniae Ab sample/Positive control in Serum by Immunoassay'}; {http://acme.org/devices/clinical-codes code 'Mycoplasma' = 'Mycoplasma', given as 'Mycoplasma'})</span></p><p><b>subject</b>: <a>Group/herd1</a></p><p><b>encounter</b>: part of a health assurance program</p><p><b>effective</b>: 20/11/2017</p><p><b>value</b>: 0.2 % (sample/positive control)<span> (Details: UCUM code % = '%')</span></p><p><b>interpretation</b>: Negative <span>(Details : {http://terminology.hl7.org/CodeSystem/v3-ObservationInterpretation code 'NEG' = 'Negative', given as 'Negative'})</span></p><p><b>specimen</b>: <a>30 serum</a></p><h3>ReferenceRanges</h3><table><tr><td>-</td><td><b>Text</b></td></tr><tr><td>*</td><td>>0.4 Positive; 0.3 to 0.4 Suspect < 0.3 Negative</td></tr></table></div>"
"resourceType" : "Observation",
"id" : "herd1",
"text" : {
"status" : "generated",
"div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Generated Narrative: Observation</b><a name=\"herd1\"> </a></p><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\">Resource Observation "herd1" </p></div><p><b>status</b>: <span title=\" the mandatory status \">final</span></p><p><b>category</b>: <span title=\" category code is A code that classifies the general type of observation being made. This is used for searching, sorting and display purposes. \">Laboratory <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"http://terminology.hl7.org/5.1.0/CodeSystem-observation-category.html\">Observation Category Codes</a>#laboratory)</span></span></p><p><b>code</b>: <span title=\" \n Observations are often coded in multiple code systems.\n - LOINC provides codes of varying granularity (though not usefully more specific in this particular case) and more generic LOINCs can be mapped to more specific codes as shown here\n - snomed provides a clinically relevant code that is usually less granular than LOINC\n - the source system provides its own code, which may be less or more granular than LOINC\n \">Mycoplasma hyopneumoniae - MHP <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"https://loinc.org/\">LOINC</a>#80219-9 "Mycoplasma hyopneumoniae Ab sample/Positive control in Serum by Immunoassay"; clinical-codes#Mycoplasma "Mycoplasma")</span></span></p><p><b>subject</b>: <span title=\" subject is a herd of 2500 breding sows \"><a href=\"group-example-herd1.html\">Group/herd1</a> "Breeding herd"</span></p><p><b>encounter</b>: <span>: part of a health assurance program</span></p><p><b>effective</b>: 2017-11-20</p><p><b>value</b>: <span title=\" In FHIR, units may be represented twice. Once in the\n agreed human representation, and once in a coded form.\n Both is best, since it's not always possible to infer\n one from the other in code.\n\n When a computable unit is provided, UCUM (http://unitsofmeasure.org)\n is always preferred, but it doesn't provide notional units (such as\n "tablet"), etc. For these, something else is required (e.g. SNOMED CT)\n \">0.2 % (sample/positive control)<span style=\"background: LightGoldenRodYellow\"> (Details: UCUM code % = '%')</span></span></p><p><b>interpretation</b>: Negative <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"http://terminology.hl7.org/5.1.0/CodeSystem-v3-ObservationInterpretation.html\">ObservationInterpretation</a>#NEG)</span></p><p><b>specimen</b>: <span title=\" Specimen is a pooled serology sample of 30 animals. \"><a href=\"specimen-example-pooled-serum.html\">Specimen/pooled-serum: 30 serum</a></span></p><h3>ReferenceRanges</h3><table class=\"grid\"><tr><td>-</td><td><b>Text</b></td></tr><tr><td>*</td><td>>0.4 Positive; 0.3 to 0.4 Suspect < 0.3 Negative</td></tr></table></div>"
},
"status": "final",
"category": [
"status" : "final",
"category" : [{
"coding" : [{
"system" : "http://terminology.hl7.org/CodeSystem/observation-category",
"code" : "laboratory",
"display" : "Laboratory"
}],
"text" : "Laboratory"
}],
"code" : {
"coding" : [{
"system" : "http://loinc.org",
"code" : "80219-9",
"display" : "Mycoplasma hyopneumoniae Ab sample/Positive control in Serum by Immunoassay"
},
{
"coding": [
{
"system": "http://terminology.hl7.org/CodeSystem/observation-category",
"code": "laboratory",
"display": "Laboratory"
}
],
"text": "Laboratory"
}
],
"code": {
"coding": [
{
"system": "http://loinc.org",
"code": "80219-9",
"display": "Mycoplasma hyopneumoniae Ab sample/Positive control in Serum by Immunoassay"
},
{
"system": "http://acme.org/devices/clinical-codes",
"code": "Mycoplasma",
"display": "Mycoplasma"
}
],
"text": "Mycoplasma hyopneumoniae - MHP"
"system" : "http://acme.org/devices/clinical-codes",
"code" : "Mycoplasma",
"display" : "Mycoplasma"
}],
"text" : "Mycoplasma hyopneumoniae - MHP"
},
"subject": {
"reference": "Group/herd1"
"subject" : {
"reference" : "Group/herd1"
},
"encounter": {
"display": "part of a health assurance program"
"encounter" : {
"display" : "part of a health assurance program"
},
"effectiveDateTime": "2017-11-20",
"valueQuantity": {
"value": 0.2,
"unit": "% (sample/positive control)",
"system": "http://unitsofmeasure.org",
"code": "%"
"effectiveDateTime" : "2017-11-20",
"valueQuantity" : {
"value" : 0.2,
"unit" : "% (sample/positive control)",
"system" : "http://unitsofmeasure.org",
"code" : "%"
},
"interpretation": [
{
"coding": [
{
"system": "http://terminology.hl7.org/CodeSystem/v3-ObservationInterpretation",
"code": "NEG",
"display": "Negative"
}
],
"text": "Negative"
}
],
"specimen": {
"reference": "Specimen/pooled-serum",
"display": "30 serum"
"interpretation" : [{
"coding" : [{
"system" : "http://terminology.hl7.org/CodeSystem/v3-ObservationInterpretation",
"code" : "NEG",
"display" : "Negative"
}],
"text" : "Negative"
}],
"specimen" : {
"reference" : "Specimen/pooled-serum",
"display" : "30 serum"
},
"referenceRange": [
{
"text": ">0.4 Positive; 0.3 to 0.4 Suspect < 0.3 Negative"
}
]
"referenceRange" : [{
"text" : ">0.4 Positive; 0.3 to 0.4 Suspect < 0.3 Negative"
}]
}
Usage note: every effort has been made to ensure that the examples are correct and useful, but they are not a normative part of the specification.
FHIR
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FHIR
Release
4
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Correction
#1)
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R5
hl7.fhir.core#5.0.0
generated
on
Fri,
Nov
1,
2019
09:36+1100.
QA
Page
Sun,
Mar
26,
2023
15:25+1100.
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