Release 4 5

This page is part of the FHIR Specification (v4.0.1: R4 (v5.0.0: R5 - Mixed Normative and STU ) ). This is the current published version in it's permanent home (it will always be available at this URL). The current version which supercedes this version is 5.0.0 . For a full list of available versions, see the Directory of published versions . Page versions: R5 R4B R4 R3

Coord-1base-example

Example MolecularSequence/coord-1-base (Narrative)

Clinical Genomics Work Group Maturity Level : N/A Standards Status : Informative Compartments : Patient

This is the narrative for the resource. See also the XML , JSON or Turtle format. This example conforms to the profile MolecularSequence .

Generated Narrative with Details Narrative: MolecularSequence

id : coord-1-base

Resource MolecularSequence "coord-1-base"

type : dna

relative

coordinateSystem : 1 1-based character counting ( LOINC #LA30102-0)

ReferenceSeqs StartingSequences

- ReferenceSeqString Sequence[x] Strand WindowStart WindowStart WindowEnd WindowEnd Strand
* ACGTAGTC watson 1 1 8 8 watson

variant edit

start : 2

end : 3

observedAllele replacementSequence : ATG

referenceAllele replacedSequence : -

cigar : 3I

variant edit

start : 5

end : 5

observedAllele replacementSequence : T

referenceAllele replacedSequence : A

cigar : 3I

variant edit

start : 7

end : 7

observedAllele replacementSequence : -

referenceAllele replacedSequence : T

cigar : 1D
observedSeq : ACATGGTAGC

 

 

Usage note: every effort has been made to ensure that the examples are correct and useful, but they are not a normative part of the specification.