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Observation-example-genetics-2.ttl

Orders and Observations Work Group
Maturity Level : N/A
Standards Status : Informative
Compartments : Device , Encounter , Patient , Practitioner , RelatedPerson
Raw Turtle (+ also see Turtle/RDF Format Specification )
Genetics example 2
@prefix fhir: <http://hl7.org/fhir/> .
@prefix loinc: <http://loinc.org/rdf#> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix sct: <http://snomed.info/id/> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .

# - resource -------------------------------------------------------------------

<http://hl7.org/fhir/Observation/example-genetics-2> a fhir:Observation;
  fhir:nodeRole fhir:treeRoot;
  fhir:Resource.id [ fhir:value "example-genetics-2"];
  fhir:DomainResource.text [
     fhir:Narrative.status [ fhir:value "generated" ];
     fhir:Narrative.div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Generated Narrative with Details</b></p><p><b>id</b>: example-genetics-2</p><p><b>status</b>: final</p><p><b>code</b>: Genetic analysis master panel--This is the parent OBR for the panel holding all of the associated observations that can be reported with a molecular genetics analysis result. <span>(Details : {LOINC code '55233-1' = 'Genetic analysis master panel - Blood or Tissue by Molecular genetics method', given as 'Genetic analysis master panel--This is the parent OBR for the panel holding all of the associated observations that can be reported with a molecular genetics analysis result.'})</span></p><p><b>subject</b>: <a>Molecular Lab Patient ID: HOSP-23456</a></p><p><b>issued</b>: 03/04/2013 3:30:10 PM</p><p><b>performer</b>: <a>Molecular Diagnostics Laboratory</a></p><p><b>value</b>: Positive <span>(Details : {SNOMED CT code '10828004' = 'Positive', given as 'Positive'})</span></p><p><b>derivedFrom</b>: <a>Observation/example-genetics-1</a></p><blockquote><p><b>component</b></p><p><b>code</b>: Genetic disease assessed <span>(Details : {LOINC code '51967-8' = 'Genetic disease assessed [Identifier] in Blood or Tissue by Molecular genetics method', given as 'Genetic disease assessed'})</span></p><p><b>value</b>: Lung cancer <span>(Details : {SNOMED CT code '363358000' = 'Malignant tumor of lung', given as 'Malignant tumor of lung (disorder)'})</span></p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: Genetic disease sequence variation interpretation <span>(Details : {LOINC code '53037-8' = 'Genetic disease sequence variation interpretation [interpretation] in Blood or Tissue by Molecular genetics method', given as 'Genetic disease sequence variation interpretation'})</span></p><p><b>value</b>: Pathogenic <span>(Details : {[not stated] code 'LA6669-1' = 'LA6669-1', given as 'Pathogenic'})</span></p></blockquote></div>"

     fhir:Narrative.div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Generated Narrative</b></p><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\">Resource &quot;example-genetics-2&quot; </p></div><p><b>status</b>: final</p><p><b>code</b>: The material on this page will be removed in a future release. This content is deprecated and SHOULD NOT be used. Implementers are instead directed to the ([Genomics Reporting Implementation Guide](http://hl7.org/fhir/uv/genomics-reporting/index.html)) for guidance. Genetic analysis master panel--This is the parent OBR for the panel holding all of the associated observations that can be reported with a molecular genetics analysis result. <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"https://loinc.org/\">LOINC</a>#55233-1)</span></p><p><b>subject</b>: <a href=\"patient-example.html\">Patient/example: Molecular Lab Patient ID: HOSP-23456</a> &quot;Peter CHALMERS&quot;</p><p><b>effective</b>: 2013-04-03T15:30:10+01:00</p><p><b>performer</b>: <a href=\"practitioner-example.html\">Practitioner/example: Molecular Diagnostics Laboratory</a> &quot;Adam CAREFUL&quot;</p><p><b>value</b>: Positive <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"https://browser.ihtsdotools.org/\">SNOMED CT</a>#10828004)</span></p><p><b>device</b>: <a href=\"device-example.html\">Device/example</a></p><p><b>derivedFrom</b>: <a href=\"observation-example-genetics-1.html\">Observation/example-genetics-1</a></p><blockquote><p><b>component</b></p><p><b>code</b>: Genetic disease assessed <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"https://loinc.org/\">LOINC</a>#51967-8)</span></p><p><b>value</b>: Lung cancer <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"https://browser.ihtsdotools.org/\">SNOMED CT</a>#363358000 &quot;Malignant tumor of lung (disorder)&quot;)</span></p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: Genetic disease sequence variation interpretation <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"https://loinc.org/\">LOINC</a>#53037-8)</span></p><p><b>value</b>: Pathogenic <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> ([not stated]#LA6669-1)</span></p></blockquote></div>"

  ];
  fhir:Observation.status [ fhir:value "final"];
  fhir:Observation.code [
     fhir:CodeableConcept.coding [
       fhir:index 0;
       a loinc:55233-1;
       fhir:Coding.system [ fhir:value "http://loinc.org" ];
       fhir:Coding.code [ fhir:value "55233-1" ];
       fhir:Coding.display [ fhir:value "Genetic analysis master panel--This is the parent OBR for the panel holding all of the associated observations that can be reported with a molecular genetics analysis result." ]

       fhir:Coding.display [ fhir:value "The material on this page will be removed in a future release. This content is deprecated and SHOULD NOT be used. Implementers are instead directed to the ([Genomics Reporting Implementation Guide](http://hl7.org/fhir/uv/genomics-reporting/index.html)) for guidance. Genetic analysis master panel--This is the parent OBR for the panel holding all of the associated observations that can be reported with a molecular genetics analysis result." ]

     ]
  ];
  fhir:Observation.subject [
     fhir:link <http://hl7.org/fhir/Patient/example>;
     fhir:Reference.reference [ fhir:value "Patient/example" ];
     fhir:Reference.display [ fhir:value "Molecular Lab Patient ID: HOSP-23456" ]
  ];
  fhir:Observation.issued [ fhir:value "2013-04-03T15:30:10+01:00"^^xsd:dateTime];

  fhir:Observation.effectiveDateTime [ fhir:value "2013-04-03T15:30:10+01:00"^^xsd:dateTime];

  fhir:Observation.performer [
     fhir:index 0;
     fhir:link <http://hl7.org/fhir/Practitioner/example>;
     fhir:Reference.reference [ fhir:value "Practitioner/example" ];
     fhir:Reference.display [ fhir:value "Molecular Diagnostics Laboratory" ]
  ];
  fhir:Observation.valueCodeableConcept [
     fhir:CodeableConcept.coding [
       fhir:index 0;
       a sct:10828004;
       fhir:Coding.system [ fhir:value "http://snomed.info/sct" ];
       fhir:Coding.code [ fhir:value "10828004" ];
       fhir:Coding.display [ fhir:value "Positive" ]
     ]
  ];
  fhir:Observation.device [
     fhir:link <http://hl7.org/fhir/Device/example>;
     fhir:Reference.reference [ fhir:value "Device/example" ]
  ];

  fhir:Observation.derivedFrom [
     fhir:index 0;
     fhir:link <http://hl7.org/fhir/Observation/example-genetics-1>;
     fhir:Reference.reference [ fhir:value "Observation/example-genetics-1" ]
  ];
  fhir:Observation.component [
     fhir:index 0;
     fhir:Observation.component.code [
       fhir:CodeableConcept.coding [
         fhir:index 0;
         a loinc:51967-8;
         fhir:Coding.system [ fhir:value "http://loinc.org" ];
         fhir:Coding.code [ fhir:value "51967-8" ];
         fhir:Coding.display [ fhir:value "Genetic disease assessed" ]
       ]
     ];
     fhir:Observation.component.valueCodeableConcept [
       fhir:CodeableConcept.coding [
         fhir:index 0;
         a sct:363358000;
         fhir:Coding.system [ fhir:value "http://snomed.info/sct" ];
         fhir:Coding.code [ fhir:value "363358000" ];
         fhir:Coding.display [ fhir:value "Malignant tumor of lung (disorder)" ]
       ];
       fhir:CodeableConcept.text [ fhir:value "Lung cancer" ]
     ]
  ], [
     fhir:index 1;
     fhir:Observation.component.code [
       fhir:CodeableConcept.coding [
         fhir:index 0;
         a loinc:53037-8;
         fhir:Coding.system [ fhir:value "http://loinc.org" ];
         fhir:Coding.code [ fhir:value "53037-8" ];
         fhir:Coding.display [ fhir:value "Genetic disease sequence variation interpretation" ]
       ]
     ];
     fhir:Observation.component.valueCodeableConcept [
       fhir:CodeableConcept.coding [
         fhir:index 0;
         fhir:Coding.code [ fhir:value "LA6669-1" ];
         fhir:Coding.display [ fhir:value "Pathogenic" ]
       ]
     ]
  ] .

<http://hl7.org/fhir/Patient/example> a fhir:Patient .

<http://hl7.org/fhir/Practitioner/example> a fhir:Practitioner .

<http://hl7.org/fhir/Device/example> a fhir:Device .


<http://hl7.org/fhir/Observation/example-genetics-1> a fhir:Observation .

# - ontology header ------------------------------------------------------------

<http://hl7.org/fhir/Observation/example-genetics-2.ttl> a owl:Ontology;
  owl:imports fhir:fhir.ttl;
  owl:versionIRI <http://build.fhir.org/Observation/example-genetics-2.ttl> .

# -------------------------------------------------------------------------------------
Usage note: every effort has been made to ensure that the examples are correct and useful, but they are not a normative part of the specification.