FHIR Release 3 (STU) 4

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Sequence-graphic-example-4.ttl

Clinical Genomics Work Group Maturity Level : N/A Ballot Standards Status : Informative Compartments : Not linked to any defined compartments Patient

Raw Turtle , JSON-LD (+ also see Turtle/RDF Format Specification )

Sequence MolecularSequence Graphic example-4 

@prefix fhir: <http://hl7.org/fhir/> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .

# - resource -------------------------------------------------------------------

<http://hl7.org/fhir/Sequence/graphic-example-4> a fhir:Sequence;

<http://hl7.org/fhir/MolecularSequence/graphic-example-4> a fhir:MolecularSequence;

  fhir:nodeRole fhir:treeRoot;
  fhir:Resource.id [ fhir:value "graphic-example-4"];
  fhir:DomainResource.text [
     fhir:Narrative.status [ fhir:value "generated" ];
     fhir:Narrative.div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Generated Narrative with Details</b></p><p><b>id</b>: graphic-example-4</p><p><b>type</b>: dna</p><p><b>coordinateSystem</b>: 0</p><h3>ReferenceSeqs</h3><table><tr><td>-</td><td><b>Chromosome</b></td><td><b>GenomeBuild</b></td><td><b>Strand</b></td><td><b>WindowStart</b></td><td><b>WindowEnd</b></td></tr><tr><td>*</td><td>chromosome 2 <span>(Details : {http://hl7.org/fhir/chromosome-human code '2' = 'chromosome 2', given as 'chromosome 2'})</span></td><td>GRCh 38</td><td>1</td><td>128273736</td><td>128273740</td></tr></table></div>"

     fhir:Narrative.div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Generated Narrative with Details</b></p><p><b>id</b>: graphic-example-4</p><p><b>type</b>: dna</p><p><b>coordinateSystem</b>: 0</p><h3>ReferenceSeqs</h3><table><tr><td>-</td><td><b>Chromosome</b></td><td><b>GenomeBuild</b></td><td><b>Strand</b></td><td><b>WindowStart</b></td><td><b>WindowEnd</b></td></tr><tr><td>*</td><td>chromosome 2 <span>(Details : {http://terminology.hl7.org/CodeSystem/chromosome-human code '2' = 'chromosome 2', given as 'chromosome 2'})</span></td><td>GRCh 38</td><td>watson</td><td>128273736</td><td>128273740</td></tr></table></div>"

  ];
  fhir:Sequence.type [ fhir:value "dna"];
  fhir:Sequence.coordinateSystem [ fhir:value "0"^^xsd:integer];
  fhir:Sequence.referenceSeq [
     fhir:Sequence.referenceSeq.chromosome [

  fhir:MolecularSequence.type [ fhir:value "dna"];
  fhir:MolecularSequence.coordinateSystem [ fhir:value "0"^^xsd:integer];
  fhir:MolecularSequence.referenceSeq [
     fhir:MolecularSequence.referenceSeq.chromosome [

       fhir:CodeableConcept.coding [
         fhir:index 0;
         fhir:Coding.system [ fhir:value "http://hl7.org/fhir/chromosome-human" ];

         fhir:Coding.system [ fhir:value "http://terminology.hl7.org/CodeSystem/chromosome-human" ];

         fhir:Coding.code [ fhir:value "2" ];
         fhir:Coding.display [ fhir:value "chromosome 2" ]
       ]
     ];
     fhir:Sequence.referenceSeq.genomeBuild [ fhir:value "GRCh 38" ];
     fhir:Sequence.referenceSeq.strand [ fhir:value "1"^^xsd:integer ];
     fhir:Sequence.referenceSeq.windowStart [ fhir:value "128273736"^^xsd:integer ];
     fhir:Sequence.referenceSeq.windowEnd [ fhir:value "128273740"^^xsd:integer ]

     fhir:MolecularSequence.referenceSeq.genomeBuild [ fhir:value "GRCh 38" ];
     fhir:MolecularSequence.referenceSeq.strand [ fhir:value "watson" ];
     fhir:MolecularSequence.referenceSeq.windowStart [ fhir:value "128273736"^^xsd:integer ];
     fhir:MolecularSequence.referenceSeq.windowEnd [ fhir:value "128273740"^^xsd:integer ]

  ] .

# - ontology header ------------------------------------------------------------

<http://hl7.org/fhir/Sequence/graphic-example-4.ttl> a owl:Ontology;

<http://hl7.org/fhir/MolecularSequence/graphic-example-4.ttl> a owl:Ontology;

  owl:imports fhir:fhir.ttl;
  owl:versionIRI <http://hl7.org/fhir/STU3/Sequence/graphic-example-4.ttl> .

  owl:versionIRI <http://build.fhir.org/MolecularSequence/graphic-example-4.ttl> .


# -------------------------------------------------------------------------------------

Usage note: every effort has been made to ensure that the examples are correct and useful, but they are not a normative part of the specification.