FHIR Release 3 (STU) 4

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Sequence-graphic-example-4.json

Clinical Genomics Work Group Maturity Level : N/A Ballot Standards Status : Informative Compartments : Not linked to any defined compartments Patient

Raw JSON ( canonical form + also see JSON Format Specification )

Sequence MolecularSequence Graphic example-4 

{
  "resourceType": "Sequence",

  "resourceType": "MolecularSequence",

  "id": "graphic-example-4",
  "text": {
    "status": "generated",
    "div": "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Generated Narrative with Details</b></p><p><b>id</b>: graphic-example-4</p><p><b>type</b>: dna</p><p><b>coordinateSystem</b>: 0</p><h3>ReferenceSeqs</h3><table><tr><td>-</td><td><b>Chromosome</b></td><td><b>GenomeBuild</b></td><td><b>Strand</b></td><td><b>WindowStart</b></td><td><b>WindowEnd</b></td></tr><tr><td>*</td><td>chromosome 2 <span>(Details : {http://hl7.org/fhir/chromosome-human code '2' = 'chromosome 2', given as 'chromosome 2'})</span></td><td>GRCh 38</td><td>1</td><td>128273736</td><td>128273740</td></tr></table></div>"

    "div": "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Generated Narrative with Details</b></p><p><b>id</b>: graphic-example-4</p><p><b>type</b>: dna</p><p><b>coordinateSystem</b>: 0</p><h3>ReferenceSeqs</h3><table><tr><td>-</td><td><b>Chromosome</b></td><td><b>GenomeBuild</b></td><td><b>Strand</b></td><td><b>WindowStart</b></td><td><b>WindowEnd</b></td></tr><tr><td>*</td><td>chromosome 2 <span>(Details : {http://terminology.hl7.org/CodeSystem/chromosome-human code '2' = 'chromosome 2', given as 'chromosome 2'})</span></td><td>GRCh 38</td><td>watson</td><td>128273736</td><td>128273740</td></tr></table></div>"

  },
  "type": "dna",
  "coordinateSystem": 0,
  "referenceSeq": {
    "chromosome": {
      "coding": [
        {
          "system": "http://hl7.org/fhir/chromosome-human",

          "system": "http://terminology.hl7.org/CodeSystem/chromosome-human",

          "code": "2",
          "display": "chromosome 2"
        }
      ]
    },
    "genomeBuild": "GRCh 38",
    "strand": 1,

    "strand": "watson",

    "windowStart": 128273736,
    "windowEnd": 128273740
  }
}

Usage note: every effort has been made to ensure that the examples are correct and useful, but they are not a normative part of the specification.