FHIR Release 3 (STU) 4

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Provenance-example-biocompute-object.ttl

Security Work Group Maturity Level : N/A Ballot Standards Status : Informative Compartments : Device , Patient , Practitioner , RelatedPerson

Raw Turtle , JSON-LD (+ also see Turtle/RDF Format Specification )

Provenance example for Biocompute objects 

@prefix fhir: <http://hl7.org/fhir/> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .

# - resource -------------------------------------------------------------------

<http://hl7.org/fhir/Provenance/example-biocompute-object> a fhir:Provenance;
  fhir:nodeRole fhir:treeRoot;
  fhir:Resource.id [ fhir:value "example-biocompute-object"];
  fhir:DomainResource.text [
     fhir:Narrative.status [ fhir:value "generated" ];
     fhir:Narrative.div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Generated Narrative with Details</b></p><p><b>id</b>: example-biocompute-object</p><p><b>target</b>: <a href=\"http://hl7.org/fhir/STU3/sequence-example.html\">Sequence/example</a></p><p><b>period</b>: 2017-6-6 --&gt; (ongoing)</p><p><b>recorded</b>: 2016-6-9 8:12:14</p><p><b>reason</b>: antiviral resistance detection (Details: [not stated] code null = 'null', stated as\n         'antiviral resistance detection')</p><h3>Agents</h3><table><tr><td>-</td><td><b>Role</b></td><td><b>Who[x]</b></td></tr><tr><td>*</td><td>Author (Details: http://hl7.org/fhir/provenance-participant-role code author = 'Author',\n             stated as 'null')</td><td><a href=\"http://hl7.org/fhir/STU3/practitioner-example.html\">Practitioner/example</a></td></tr></table><h3>Entities</h3><table><tr><td>-</td><td><b>Role</b></td><td><b>Reference</b></td></tr><tr><td>*</td><td>source</td><td><a href=\"https://hive.biochemistry.gwu.edu/cgi-bin/prd/htscsrs/servlet.cgi?pageid=bcoexample_1\">Biocompute example</a></td></tr></table></div>"

     fhir:Narrative.div "<div xmlns=\"http://www.w3.org/1999/xhtml\">\n			<p>\n				<b>Generated Narrative with Details</b>\n			</p><p>\n				<b>id</b>: example-biocompute-object</p><p>\n				<b>target</b>: <a href=\"http://build.fhir.org/sequence-example.html\">MolecularSequence/example</a>\n			</p><p>\n				<b>period</b>: 2017-6-6 --&gt; (ongoing)</p><p>\n				<b>recorded</b>: 2016-6-9 8:12:14</p><p>\n				<b>reason</b>: antiviral resistance detection (Details: [not stated] code null = 'null', stated as\n         'antiviral resistance detection')</p>\n			<h3>Agents</h3>\n			<table>\n				<tr>\n					<td>-</td>\n					<td>\n						<b>Role</b>\n					</td>\n					<td>\n						<b>Who</b>\n					</td>\n				</tr>\n				<tr>\n					<td>*</td>\n					<td>Author (Details: http://hl7.org/fhir/provenance-participant-role code author = 'Author',\n             stated as 'null')</td>\n					<td>\n						<a href=\"http://build.fhir.org/practitioner-example.html\">Practitioner/example</a>\n					</td>\n				</tr>\n			</table>\n			<h3>Entities</h3>\n			<table>\n				<tr>\n					<td>-</td>\n					<td>\n						<b>Role</b>\n					</td>\n					<td>\n						<b>Reference</b>\n					</td>\n				</tr>\n				<tr>\n					<td>*</td>\n					<td>source</td>\n					<td>\n						<a href=\"https://hive.biochemistry.gwu.edu/cgi-bin/prd/htscsrs/servlet.cgi?pageid=bcoexample_1\">Biocompute example</a>\n					</td>\n				</tr>\n			</table>\n		</div>"

  ];
  fhir:Provenance.target [
     fhir:index 0;
     fhir:link <http://hl7.org/fhir/Sequence/example>;
     fhir:Reference.reference [ fhir:value "Sequence/example" ]

     fhir:link <http://hl7.org/fhir/MolecularSequence/example>;
     fhir:Reference.reference [ fhir:value "MolecularSequence/example" ]

  ];
  fhir:Provenance.period [

  fhir:Provenance.occurredPeriod [

     fhir:Period.start [ fhir:value "2017-06-06"^^xsd:date ]
  ];
  fhir:Provenance.recorded [ fhir:value "2016-06-09T08:12:14+10:00"^^xsd:dateTime];
  fhir:Provenance.reason [
     fhir:index 0;
     fhir:Coding.display [ fhir:value "antiviral resistance detection" ]

     fhir:CodeableConcept.text [ fhir:value "antiviral resistance detection" ]

  ];
  fhir:Provenance.agent [
     fhir:index 0;
     fhir:Provenance.agent.role [
       fhir:index 0;

     fhir:Provenance.agent.type [

       fhir:CodeableConcept.coding [
         fhir:index 0;
         fhir:Coding.system [ fhir:value "http://hl7.org/fhir/v3/ParticipationType" ];

         fhir:Coding.system [ fhir:value "http://terminology.hl7.org/CodeSystem/v3-ParticipationType" ];

         fhir:Coding.code [ fhir:value "AUT" ]
       ]
     ];
     fhir:Provenance.agent.whoReference [

     fhir:Provenance.agent.who [

       fhir:link <http://hl7.org/fhir/Practitioner/example>;
       fhir:Reference.reference [ fhir:value "Practitioner/example" ]
     ]
  ];
  fhir:Provenance.entity [
     fhir:index 0;
     fhir:Provenance.entity.role [ fhir:value "source" ];
     fhir:Provenance.entity.whatIdentifier [
       fhir:Identifier.type [
         fhir:CodeableConcept.coding [
           fhir:index 0;
           fhir:Coding.system [ fhir:value "https://hive.biochemistry.gwu.edu" ];
           fhir:Coding.code [ fhir:value "biocompute" ];
           fhir:Coding.display [ fhir:value "obj.1001" ]
         ]
       ];
       fhir:Identifier.value [ fhir:value "https://hive.biochemistry.gwu.edu/cgi-bin/prd/htscsrs/servlet.cgi?pageid=bcoexample_1" ]

     fhir:Provenance.entity.what [
       fhir:Reference.identifier [
         fhir:Identifier.type [
           fhir:CodeableConcept.coding [
             fhir:index 0;
             fhir:Coding.system [ fhir:value "https://hive.biochemistry.gwu.edu" ];
             fhir:Coding.code [ fhir:value "biocompute" ];
             fhir:Coding.display [ fhir:value "obj.1001" ]
           ]
         ];
         fhir:Identifier.value [ fhir:value "https://hive.biochemistry.gwu.edu/cgi-bin/prd/htscsrs/servlet.cgi?pageid=bcoexample_1" ]
       ]

     ]
  ] .

<http://hl7.org/fhir/Sequence/example> a fhir:Sequence .

<http://hl7.org/fhir/MolecularSequence/example> a fhir:MolecularSequence .


<http://hl7.org/fhir/Practitioner/example> a fhir:Practitioner .

# - ontology header ------------------------------------------------------------

<http://hl7.org/fhir/Provenance/example-biocompute-object.ttl> a owl:Ontology;
  owl:imports fhir:fhir.ttl;
  owl:versionIRI <http://hl7.org/fhir/STU3/Provenance/example-biocompute-object.ttl> .

  owl:versionIRI <http://build.fhir.org/Provenance/example-biocompute-object.ttl> .


# -------------------------------------------------------------------------------------

Usage note: every effort has been made to ensure that the examples are correct and useful, but they are not a normative part of the specification.