Release 5 R6 Ballot (2nd Draft)

This page is part of the FHIR Specification (v5.0.0: R5 - STU v6.0.0-ballot2: Release 6 Ballot (2nd Draft) (see Ballot Notes ). This is the The current published version in it's permanent home (it will always be available at this URL). is 5.0.0 . For a full list of available versions, see the Directory of published versions

4.4.1.638 4.4.1.664 ValueSet http://hl7.org/fhir/ValueSet/genomicstudy-dataformat

Clinical Genomics icon Work Group   Maturity Level : 1 Trial Use Use Context : Country: World, Not yet ready for Production use
Official URL : http://hl7.org/fhir/ValueSet/genomicstudy-dataformat Version : 5.0.0 6.0.0-ballot2
draft as of 2022-08-18 Computable Name : GenomicStudyDataFormat
Flags : Experimental OID : 2.16.840.1.113883.4.642.3.3084

This value set is used in the following places:

4.4.1.638.1 4.4.1.664.1 Definition

The data formats relevant to Genomic Study analysis.

4.4.1.638.2 4.4.1.664.2 Content Logical Definition

Generated Narrative: ValueSet genomicstudy-dataformat

Last updated: 2024-08-12T19:52:12.437+11:00

Profile: Shareable ValueSet

 

4.4.1.638.3 4.4.1.664.3 Expansion

This expansion generated 26 Mar 2023 12 Aug 2024

This value set contains 40 concepts

Generated Narrative: ValueSet

Last updated: 2024-08-12T19:52:12.437+11:00

Profile: Shareable ValueSet

Expansion based on codesystem Genomic Study Data Format v5.0.0 v6.0.0-ballot2 (CodeSystem)

This value set contains 40 concepts

Code System Display
   bam http://hl7.org/fhir/genomicstudy-dataformat BAM
   bed http://hl7.org/fhir/genomicstudy-dataformat BED
   bedpe http://hl7.org/fhir/genomicstudy-dataformat BEDPE
   bedgraph http://hl7.org/fhir/genomicstudy-dataformat BedGraph
   bigbed http://hl7.org/fhir/genomicstudy-dataformat bigBed
   bigWig http://hl7.org/fhir/genomicstudy-dataformat bigWig
   birdsuite-files http://hl7.org/fhir/genomicstudy-dataformat Birdsuite-Files
   broadpeak http://hl7.org/fhir/genomicstudy-dataformat broadPeak
   cbs http://hl7.org/fhir/genomicstudy-dataformat CBS
   chemical-reactivity-probing-profiles http://hl7.org/fhir/genomicstudy-dataformat Chemical-Reactivity-Probing-Profiles
   chrom-sizes http://hl7.org/fhir/genomicstudy-dataformat chrom-sizes
   cn http://hl7.org/fhir/genomicstudy-dataformat CN
   custom-file-formats http://hl7.org/fhir/genomicstudy-dataformat Custom-File-Formats
   cytoband http://hl7.org/fhir/genomicstudy-dataformat Cytoband
   fasta http://hl7.org/fhir/genomicstudy-dataformat FASTA
   gct http://hl7.org/fhir/genomicstudy-dataformat GCT
   cram http://hl7.org/fhir/genomicstudy-dataformat CRAM
   genepred http://hl7.org/fhir/genomicstudy-dataformat genePred
   gff-gtf http://hl7.org/fhir/genomicstudy-dataformat GFF/GTF
   gistic http://hl7.org/fhir/genomicstudy-dataformat GISTIC
   goby http://hl7.org/fhir/genomicstudy-dataformat Goby
   gwas http://hl7.org/fhir/genomicstudy-dataformat GWAS
   igv http://hl7.org/fhir/genomicstudy-dataformat IGV
   loh http://hl7.org/fhir/genomicstudy-dataformat LOH
   maf-multiple-alignment-format http://hl7.org/fhir/genomicstudy-dataformat MAF-Multiple Alignment Format
   maf-mutation-annotation-format http://hl7.org/fhir/genomicstudy-dataformat MAF-Mutation-Annotation-Format
   merged-bam-file http://hl7.org/fhir/genomicstudy-dataformat Merged BAM File
   mut http://hl7.org/fhir/genomicstudy-dataformat MUT
   narrowpeak http://hl7.org/fhir/genomicstudy-dataformat narrowPeak
   psl http://hl7.org/fhir/genomicstudy-dataformat PSL
   res http://hl7.org/fhir/genomicstudy-dataformat RES
   rna-secondary-structure-formats http://hl7.org/fhir/genomicstudy-dataformat RNA-Secondary-Structure-Formats
   sam http://hl7.org/fhir/genomicstudy-dataformat SAM
   sample-info-attributes-file http://hl7.org/fhir/genomicstudy-dataformat Sample-Info-Attributes-file
   seg http://hl7.org/fhir/genomicstudy-dataformat SEG
   tdf http://hl7.org/fhir/genomicstudy-dataformat TDF
   track-line http://hl7.org/fhir/genomicstudy-dataformat Track Line
   type-line http://hl7.org/fhir/genomicstudy-dataformat Type Line
   vcf http://hl7.org/fhir/genomicstudy-dataformat VCF
   wig http://hl7.org/fhir/genomicstudy-dataformat WIG

 

See the full registry of value sets defined as part of FHIR.

Explanation of the columns that may appear on this page:

Lvl A few code lists that FHIR defines are hierarchical - each code is assigned a level. For value sets, levels are mostly used to organize codes for user convenience, but may follow code system hierarchy - see Code System for further information
Source The source of the definition of the code (when the value set draws in codes defined elsewhere)
Code The code (used as the code in the resource instance). If the code is in italics, this indicates that the code is not selectable ('Abstract')
Display The display (used in the display element of a Coding ). If there is no display, implementers should not simply display the code, but map the concept into their application
Definition An explanation of the meaning of the concept
Comments Additional notes about how to use the code