Bacterial Isolate from Stool sample (id = "isolate")

<?xml version="1.0" encoding="UTF-8"?>

<Specimen xmlns="http://hl7.org/fhir">
  <id value="isolate"/> 
    <!--   text>

        <!--   text>
    <status value="generated" />
    <div xmlns="http://www.w3.org/1999/xhtml">[Put rendering here]</div>
  </text>   -->

  display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px
       solid #8da1b4; border-radius: 5px; line-height: 60%display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px
         solid #8da1b4; border-radius: 5px; line-height: 60%

  <text> <status value="generated"/> <div xmlns="http://www.w3.org/1999/xhtml"><p> <b> Generated Narrative: Specimen</b> <a name="isolate"> </a> </p> <div style="display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border:
       1px solid #8da1b4; border-radius: 5px; line-height: 60%"><p style="margin-bottom: 0px">Resource Specimen &quot;isolate&quot; </p> </div> <p> <b> accessionIdentifier</b> : id: X352356-ISO1</p> <p> <b> status</b> : available</p> <p> <b> type</b> : Bacterial isolate specimen <span style="background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki"> (<a href="https://browser.ihtsdotools.org/">SNOMED CT</a> #429951000124103)</span> </p> <p> <b> subject</b> : <a href="patient-example.html">Patient/example</a>  &quot;Peter CHALMERS&quot;</p> <p> <b> receivedTime</b> : 2015-08-18T07:03:00Z</p> <p> <b> parent</b> : <a name="stool"> </a> </p> <blockquote> <p/>  <p> <a name="stool"> </a> </p> <p> <b> accessionIdentifier</b> : id: X352356</p> <p> <b> status</b> : unavailable</p> <p> <b> type</b> : Stool specimen <span style="background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki"> (<a href="https://browser.ihtsdotools.org/">SNOMED CT</a> #119339001)</span> </p> <p> <b> subject</b> : <a href="patient-example.html">Patient/example</a>  &quot;Peter CHALMERS&quot;</p> <p> <b> receivedTime</b> : 2015-08-16T07:03:00Z</p> <h3> Collections</h3> <table class="grid"><tr> <td> -</td> <td> <b> Collector</b> </td> <td> <b> Collected[x]</b> </td> <td> <b> Method</b> </td> </tr> <tr> <td> *</td> <td> <span> : Patient</span> </td> <td> <span title="    the time of collection is usually required. Usually a point in time, but can
               be a period 
      (collectedPeriod) if it's a timed collection (e.g. a 24 hour urine)    ">2011-08-16T06:15:00Z</span> </td> <td> <span title="    method is usually implied by type    ">Line, Venous <span style="background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki"> (<a href="http://terminology.hl7.org/4.0.0/CodeSystem-v2-0488.html">specimenCollectionMethod</a> #LNV)</span> </span> </td> </tr> </table> </blockquote> <p> <b> role</b> : Patient <span style="background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki"> ([not stated]#p)</span> </p> <h3> Collections</h3> <table class="grid"><tr> <td> -</td> <td> <b> Collector</b> </td> <td> <b> Collected[x]</b> </td> <td> <b> Method</b> </td> </tr> <tr> <td> *</td> <td> <a href="practitioner-example-f202-lm.html">Practitioner/f202</a>  &quot;Luigi Maas&quot;</td> <td> <span title="    the time of collection is usually required. Usually a point in time, but can
             be a period 
      (collectedPeriod) if it's a timed collection (e.g. a 24 hour urine)    ">2015-08-16T07:03:00Z</span> </td> <td> <span title="    method is usually implied by type    ">Plates, Blood Agar <span style="background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki"> (<a href="http://terminology.hl7.org/4.0.0/CodeSystem-v2-0488.html">specimenCollectionMethod</a> #BAP)</span> </span> </td> </tr> </table> <p> <b> note</b> : Patient dropped off specimen</p> </div> </text> <contained> 

    <Specimen> 
      <id value="stool"/> 
      <accessionIdentifier> 
        <!--    accession identifier - e.g. assigned by the labaratory when it is received.

            <!--    accession identifier - e.g. assigned by the labaratory when it is received.
     This is common, unlike specimen identifier    -->
        <system value="http://lab.acme.org/specimens/2015"/> 
        <value value="X352356"/> 
      </accessionIdentifier> 
      <status value="unavailable"/> 
      <type> 
        <!--   
   Type is a loosely defined field because there is such a lot of variation in how it
         is used.

            <!--   
   Type is a loosely defined field because there is such a lot of variation in
         how it is used.

   The principal variation is how much information that could be represented elsewhere
         is also
   represented here. For instance, here's some possible types:
     lithium heparin plasma   (+ .container.additive) (e.g. SNOMED CT 446272009)
     transfusion bag of blood (+ container.type)
     Peritoneal lavage        (+ collection.bodySite)
   If the type includes other fields, it would be normal not to populate the other fields

   If the type includes other fields, it would be normal not to populate the other
         fields


   Note that this practice is so widespread that it's pointless to try and stop it 

   Note that this practice is so widespread that it's pointless to try and stop
         it 

   -->
        <coding> 
          <system value="http://snomed.info/sct"/> 
          <code value="119339001"/> 
          <display value="Stool specimen"/> 
        </coding> 
      </type> 
      <subject> 
        <reference value="Patient/example"/> 
      </subject> 
      <receivedTime value="2015-08-16T07:03:00Z"/> 
      <collection> 
        <collector> 
          

              <!--      in practice, collecter is almost always recorded      -->
          <display value="Patient"/> 
        </collector> 
        <!--      the time of collection is usually required. Usually a point in time, but can be a
         period 

            <!--      the time of collection is usually required. Usually a point in time, but can
         be a period 

      (collectedPeriod) if it's a timed collection (e.g. a 24 hour urine)      -->
        <collectedDateTime value="2011-08-16T06:15:00Z"/> 
        

            <!--      method is usually implied by type      -->
        <method> 
          <coding> 
            <system value="http://terminology.hl7.org/CodeSystem/v2-0488"/> 
            <code value="LNV"/> 
          </coding> 
        </method> 
      </collection> 
    </Specimen> 
  </contained> 
  <accessionIdentifier> 
    <system value="http://lab.acme.org/specimens/2011"/> 
    <value value="X352356-ISO1"/> 
  </accessionIdentifier> 
  <status value="available"/> 
  <type> 
    <coding> 
      <system value="http://snomed.info/sct"/> 
      <code value="429951000124103"/> 
      <display value="Bacterial isolate specimen"/> 
    </coding> 
  </type> 
  <subject> 
    <reference value="Patient/example"/> 
  </subject> 
  <receivedTime value="2015-08-18T07:03:00Z"/> 
  <parent> 
    <reference value="#stool"/> 
  </parent> 
  <role> 
    <coding> 
            <code value="p"/> 
      <display value="Patient"/> 
    </coding> 
  </role> 
  <collection> 
    <collector> 
      

          <!--      in practice, collecter is almost always recorded      -->
      <reference value="Practitioner/f202"/> 
    </collector> 
    <!--      the time of collection is usually required. Usually a point in time, but can be a
     period 

        <!--      the time of collection is usually required. Usually a point in time, but can
     be a period 

      (collectedPeriod) if it's a timed collection (e.g. a 24 hour urine)      -->
    <collectedDateTime value="2015-08-16T07:03:00Z"/> 
    

        <!--      method is usually implied by type      -->
    <method> 
      <coding> 
        <system value="http://terminology.hl7.org/CodeSystem/v2-0488"/> 
        <code value="BAP"/> 
      </coding> 
    </method> 
  </collection> 
  <note> 
    <text value="Patient dropped off specimen"/> 
  </note> 


</

Specimen

>