DocumentReference
-
Simple
Variant
Analysis
-
Called
researchStudy
@prefix fhir: <http://hl7.org/fhir/> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
# - resource -------------------------------------------------------------------
[a fhir:DocumentReference ;
fhir:nodeRole fhir:treeRoot ;
fhir:id [ fhir:v "SimpleVariantAnalysis-called"] ; #
fhir:text [
fhir:status [ fhir:v "generated" ] ;
fhir:div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Generated Narrative</b></p><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\">Resource "SimpleVariantAnalysis_called" </p></div><p><b>identifier</b>: id: 11118</p><p><b>status</b>: current</p><p><b>docStatus</b>: preliminary</p><p><b>description</b>: A sample Document Reference instance representing a BED file that may be used as input or output of a genomic analysis pipeline.</p><p><b>securityLabel</b>: Restricted <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"http://terminology.hl7.org/3.1.0/CodeSystem-v3-Confidentiality.html\">Confidentiality</a>#R)</span></p><blockquote><p><b>content</b></p></blockquote></div>"
] ; #
fhir:identifier ( [
fhir:system [ fhir:v "http://www.somesystemabc.net/identifiers/files"^^xsd:anyURI ] ;
fhir:value [ fhir:v "11118" ]
] ) ; #
fhir:status [ fhir:v "current"] ; #
fhir:docStatus [ fhir:v "preliminary"] ; #
fhir:description [ fhir:v "SimpleVariantAnalysis_called: A sample Document Reference instance representing a BED file that may be used as input or output of a genomic analysis pipeline."] ; #
fhir:securityLabel ( [
fhir:coding ( [
fhir:system [ fhir:v "http://terminology.hl7.org/CodeSystem/v3-Confidentiality"^^xsd:anyURI ] ;
fhir:code [ fhir:v "R" ] ;
fhir:display [ fhir:v "Restricted" ]
] )
] ) ; #
fhir:content ( [
fhir:attachment [
fhir:url [ fhir:v "https://chat.fhir.org/user_uploads/10155/jQZWWKs4JO8ZfhfrbsCbbMUA/SimpleVariantAnalysis_called.bed"^^xsd:anyURI ] ;
fhir:title [ fhir:v "SimpleVariantAnalysis_called" ] ; # This line may need to be changed later
fhir:creation [ fhir:v "2019-03-01T01:02:01+01:00"^^xsd:dateTime ]
]
] )] . #
# -------------------------------------------------------------------------------------
<?xml version="1.0" encoding="UTF-8"?>
<StructureDefinition xmlns="http://hl7.org/fhir">
<id value="workflow-researchStudy"/>
<extension url="http://hl7.org/fhir/StructureDefinition/structuredefinition-wg">
<valueCode value="fhir"/>
</extension>
<extension url="http://hl7.org/fhir/StructureDefinition/structuredefinition-fmm">
<valueInteger value="1"/>
</extension>
<extension url="http://hl7.org/fhir/StructureDefinition/structuredefinition-standards-status">
<valueCode value="trial-use"/>
</extension>
<url value="http://hl7.org/fhir/StructureDefinition/workflow-researchStudy"/>
<version value="5.0.0-snapshot3"/>
<name value="researchStudy"/>
<status value="draft"/>
<experimental value="false"/>
<date value="2017-12-06"/>
<publisher value="Health Level Seven, Inc. - FHIR WG"/>
<contact>
<telecom>
<system value="url"/>
<value value="http://hl7.org/special/committees/fwg"/>
</telecom>
</contact>
<description value="Indicates that this event is relevant to the specified research study(ies)."/>
<fhirVersion value="5.0.0-snapshot3"/>
<mapping>
<identity value="workflow"/>
<uri value="http://hl7.org/fhir/workflow"/>
<name value="Workflow Pattern"/>
</mapping>
<mapping>
<identity value="rim"/>
<uri value="http://hl7.org/v3"/>
<name value="RIM Mapping"/>
</mapping>
<kind value="complex-type"/>
<abstract value="false"/>
<context>
<type value="element"/>
<expression value="Composition"/>
</context>
<context>
<type value="element"/>
<expression value="Consent"/>
</context>
<context>
<type value="element"/>
<expression value="DeviceUsage"/>
</context>
<context>
<type value="element"/>
<expression value="DiagnosticReport"/>
</context>
<context>
<type value="element"/>
<expression value="Encounter"/>
</context>
<context>
<type value="element"/>
<expression value="FamilyMemberHistory"/>
</context>
<context>
<type value="element"/>
<expression value="Immunization"/>
</context>
<context>
<type value="element"/>
<expression value="DocumentReference"/>
</context>
<context>
<type value="element"/>
<expression value="MedicationAdministration"/>
</context>
<context>
<type value="element"/>
<expression value="MedicationDispense"/>
</context>
<context>
<type value="element"/>
<expression value="MedicationUsage"/>
</context>
<context>
<type value="element"/>
<expression value="Observation"/>
</context>
<context>
<type value="element"/>
<expression value="Procedure"/>
</context>
<context>
<type value="element"/>
<expression value="QuestionnaireResponse"/>
</context>
<context>
<type value="element"/>
<expression value="RiskAssessment"/>
</context>
<context>
<type value="element"/>
<expression value="SupplyDelivery"/>
</context>
<context>
<type value="element"/>
<expression value="Task"/>
</context>
<type value="Extension"/>
<baseDefinition value="http://hl7.org/fhir/StructureDefinition/Extension"/>
<derivation value="constraint"/>
<snapshot>
<element id="Extension">
<path value="Extension"/>
<short value="Associated research study"/>
<definition value="Indicates that this event is relevant to the specified research study(ies)."/>
<comment value="This relevance might mean that the event occurred as part of the study protocol,
but can also include events that occurred outside the study but still have relevance
(e.g. adverse events, co-occurring medications, unexpected Observations, etc.)."/>
<min value="0"/>
<max value="*"/>
<base>
<path value="Extension"/>
<min value="0"/>
<max value="*"/>
</base>
<constraint>
<key value="ele-1"/>
<severity value="error"/>
<human value="All FHIR elements must have a @value or children"/>
<expression value="hasValue() or (children().count() > id.count())"/>
<source value="http://hl7.org/fhir/StructureDefinition/Element"/>
</constraint>
<constraint>
<key value="ext-1"/>
<severity value="error"/>
<human value="Must have either extensions or value[x], not both"/>
<expression value="extension.exists() != value.exists()"/>
<source value="http://hl7.org/fhir/StructureDefinition/Extension"/>
</constraint>
<isModifier value="false"/>
<mapping>
<identity value="workflow"/>
<map value="Event.researchStudy"/>
</mapping>
<mapping>
<identity value="rim"/>
<map value=".outboundRelationship[typeCode=PERT].target[classCode=CLNTRL, moodCode=EVN]"/>
</mapping>
</element>
<element id="Extension.id">
<path value="Extension.id"/>
<representation value="xmlAttr"/>
<short value="Unique id for inter-element referencing"/>
<definition value="Unique id for the element within a resource (for internal references). This may
be any string value that does not contain spaces."/>
<min value="0"/>
<max value="1"/>
<base>
<path value="Element.id"/>
<min value="0"/>
<max value="1"/>
</base>
<type>
<extension url="http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type">
<valueUrl value="id"/>
</extension>
<code value="http://hl7.org/fhirpath/System.String"/>
</type>
<isModifier value="false"/>
<isSummary value="false"/>
<mapping>
<identity value="rim"/>
<map value="n/a"/>
</mapping>
</element>
<element id="Extension.extension">
<path value="Extension.extension"/>
<slicing>
<discriminator>
<type value="value"/>
<path value="url"/>
</discriminator>
<description value="Extensions are always sliced by (at least) url"/>
<rules value="open"/>
</slicing>
<short value="Extension"/>
<definition value="An Extension"/>
<min value="0"/>
<max value="0"/>
<base>
<path value="Element.extension"/>
<min value="0"/>
<max value="*"/>
</base>
<type>
<code value="Extension"/>
</type>
<constraint>
<key value="ele-1"/>
<severity value="error"/>
<human value="All FHIR elements must have a @value or children"/>
<expression value="hasValue() or (children().count() > id.count())"/>
<source value="http://hl7.org/fhir/StructureDefinition/Element"/>
</constraint>
<constraint>
<key value="ext-1"/>
<severity value="error"/>
<human value="Must have either extensions or value[x], not both"/>
<expression value="extension.exists() != value.exists()"/>
<source value="http://hl7.org/fhir/StructureDefinition/Extension"/>
</constraint>
<isModifier value="false"/>
<isSummary value="false"/>
</element>
<element id="Extension.url">
<path value="Extension.url"/>
<representation value="xmlAttr"/>
<short value="identifies the meaning of the extension"/>
<definition value="Source of the definition for the extension code - a logical name or a URL."/>
<comment value="The definition may point directly to a computable or human-readable definition
of the extensibility codes, or it may be a logical URI as declared in some other
specification. The definition SHALL be a URI for the Structure Definition defining
the extension."/>
<min value="1"/>
<max value="1"/>
<base>
<path value="Extension.url"/>
<min value="1"/>
<max value="1"/>
</base>
<type>
<extension url="http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type">
<valueUrl value="uri"/>
</extension>
<code value="http://hl7.org/fhirpath/System.String"/>
</type>
<fixedUri value="http://hl7.org/fhir/StructureDefinition/workflow-researchStudy"/>
<isModifier value="false"/>
<isSummary value="false"/>
<mapping>
<identity value="rim"/>
<map value="N/A"/>
</mapping>
</element>
<element id="Extension.value[x]">
<path value="Extension.value[x]"/>
<short value="Value of extension"/>
<definition value="Value of extension - must be one of a constrained set of the data types (see [Extensibility](
extensibility.html) for a list)."/>
<min value="1"/>
<max value="1"/>
<base>
<path value="Extension.value[x]"/>
<min value="0"/>
<max value="1"/>
</base>
<type>
<code value="Reference"/>
<targetProfile value="http://hl7.org/fhir/StructureDefinition/ResearchStudy"/>
</type>
<constraint>
<key value="ele-1"/>
<severity value="error"/>
<human value="All FHIR elements must have a @value or children"/>
<expression value="hasValue() or (children().count() > id.count())"/>
<source value="http://hl7.org/fhir/StructureDefinition/Element"/>
</constraint>
<isModifier value="false"/>
<isSummary value="false"/>
<mapping>
<identity value="rim"/>
<map value="N/A"/>
</mapping>
</element>
</snapshot>
<differential>
<element id="Extension">
<path value="Extension"/>
<short value="Associated research study"/>
<definition value="Indicates that this event is relevant to the specified research study(ies)."/>
<comment value="This relevance might mean that the event occurred as part of the study protocol,
but can also include events that occurred outside the study but still have relevance
(e.g. adverse events, co-occurring medications, unexpected Observations, etc.)."/>
<min value="0"/>
<max value="*"/>
<mapping>
<identity value="workflow"/>
<map value="Event.researchStudy"/>
</mapping>
<mapping>
<identity value="rim"/>
<map value=".outboundRelationship[typeCode=PERT].target[classCode=CLNTRL, moodCode=EVN]"/>
</mapping>
</element>
<element id="Extension.extension">
<path value="Extension.extension"/>
<max value="0"/>
</element>
<element id="Extension.url">
<path value="Extension.url"/>
<fixedUri value="http://hl7.org/fhir/StructureDefinition/workflow-researchStudy"/>
</element>
<element id="Extension.value[x]">
<path value="Extension.value[x]"/>
<min value="1"/>
<type>
<code value="Reference"/>
<targetProfile value="http://hl7.org/fhir/StructureDefinition/ResearchStudy"/>
</type>
</element>
</differential>
</
StructureDefinition
>
Usage
note:
every
effort
has
been
made
to
ensure
that
the
examples
are
correct
and
useful,
but
they
are
not
a
normative
part
of
the
specification.
Foundation
|
Propose
a
change