4.4.1.659 ValueSet http://hl7.org/fhir/ValueSet/genomicstudy-dataformat

Vocabulary Clinical Genomics Work Group

Maturity Level : N/A 1

Standards Status Trial Use

Use Context : Informative Country: World, Not yet ready for Production use

• Narrative
• XML
• JSON
• TTL

Official URL : http://hl7.org/fhir/ValueSet/genomicstudy-dataformat				Version : 5.0.0-draft-final
draft as of 2022-08-18				Computable Name : GenomicStudyDataFormat
Flags : Experimental				OID : 2.16.840.1.113883.4.642.3.3084

Raw JSON This value set is used in the following places:

• CodeSystem: This value set is the designated 'entire code system' value set for GenomicStudyDataFormat ( canonical form
• Resource: GenomicStudy.analysis.input.type + also see JSON Format Specification (CodeableConcept / Example )
• Resource: GenomicStudy.analysis.output.type (CodeableConcept / Example )

4.4.1.659.1 Definition

The data formats relevant to Genomic Study analysis.

4.4.1.659.2 Content Logical Definition

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special-status  

{ "resourceType" : "StructureDefinition", "id" : "valueset-special-status", "extension" : [{ "url" : "http://hl7.org/fhir/StructureDefinition/structuredefinition-wg", "valueCode" : "vocab" }, { "url" : "http://hl7.org/fhir/StructureDefinition/structuredefinition-fmm", "valueInteger" : 1 }], "url" : "http://hl7.org/fhir/StructureDefinition/valueset-special-status", "version" : "4.0.1", "name" : "special-status", "status" : "draft", "date" : "2019-11-01T09:29:23+11:00", "publisher" : "HL7", "description" : "A special note for implementers about the status of the resource.", "fhirVersion" : "4.0.1", "mapping" : [{ "identity" : "rim", "uri" : "http://hl7.org/v3", "name" : "RIM Mapping" }], "kind" : "complex-type", "abstract" : false, "context" : [{ "type" : "element", "expression" : "ValueSet" }, { "type" : "element", "expression" : "CodeSystem" }], "type" : "Extension", "baseDefinition" : "http://hl7.org/fhir/StructureDefinition/Extension", "derivation" : "constraint", "snapshot" : { "element" : [{ "id" : "Extension", "path" : "Extension", "short" : "Special note about status for implementers", "definition" : "A special note for implementers about the status of the resource.", "comment" : "This is used in the build to mark that though a resource is normative, it changes with the build.", "min" : 0, "max" : "1", "base" : { "path" : "Extension", "min" : 0, "max" : "*" }, "condition" : ["ele-1"], "constraint" : [{ "key" : "ele-1", "severity" : "error", "human" : "All FHIR elements must have a @value or children", "expression" : "hasValue() or (children().count() > id.count())", "xpath" : "@value|f:*|h:div", "source" : "http://hl7.org/fhir/StructureDefinition/Element" }, { "key" : "ext-1", "severity" : "error", "human" : "Must have either extensions or value[x], not both", "expression" : "extension.exists() != value.exists()", "xpath" : "exists(f:extension)!=exists(f:*[starts-with(local-name(.), 'value')])", "source" : "http://hl7.org/fhir/StructureDefinition/Extension" }], "isModifier" : false }, { "id" : "Extension.id", "path" : "Extension.id", "representation" : ["xmlAttr"], "short" : "Unique id for inter-element referencing", "definition" : "Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.", "min" : 0, "max" : "1", "base" : { "path" : "Element.id", "min" : 0, "max" : "1" }, "type" : [{ "extension" : [{ "url" : "http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type", "valueUrl" : "string" }], "code" : "http://hl7.org/fhirpath/System.String" }], "isModifier" : false, "isSummary" : false, "mapping" : [{ "identity" : "rim", "map" : "n/a" }] }, { "id" : "Extension.extension", "path" : "Extension.extension", "slicing" : { "discriminator" : [{ "type" : "value", "path" : "url" }], "description" : "Extensions are always sliced by (at least) url", "rules" : "open" }, "short" : "Extension", "definition" : "An Extension", "min" : 0, "max" : "0", "base" : { "path" : "Element.extension", "min" : 0, "max" : "*" }, "type" : [{ "code" : "Extension" }], "constraint" : [{ "key" : "ele-1", "severity" : "error", "human" : "All FHIR elements must have a @value or children", "expression" : "hasValue() or (children().count() > id.count())", "xpath" : "@value|f:*|h:div", "source" : "http://hl7.org/fhir/StructureDefinition/Element" }, { "key" : "ext-1", "severity" : "error", "human" : "Must have either extensions or value[x], not both", "expression" : "extension.exists() != value.exists()", "xpath" : "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])", "source" : "http://hl7.org/fhir/StructureDefinition/Extension" }], "isModifier" : false, "isSummary" : false }, { "id" : "Extension.url", "path" : "Extension.url", "representation" : ["xmlAttr"], "short" : "identifies the meaning of the extension", "definition" : "Source of the definition for the extension code - a logical name or a URL.", "comment" : "The definition may point directly to a computable or human-readable definition of the extensibility codes, or it may be a logical URI as declared in some other specification. The definition SHALL be a URI for the Structure Definition defining the extension.", "min" : 1, "max" : "1", "base" : { "path" : "Extension.url", "min" : 1, "max" : "1" }, "type" : [{ "extension" : [{ "url" : "http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type", "valueUrl" : "uri" }], "code" : "http://hl7.org/fhirpath/System.String" }], "fixedUri" : "http://hl7.org/fhir/StructureDefinition/valueset-special-status", "isModifier" : false, "isSummary" : false, "mapping" : [{ "identity" : "rim", "map" : "N/A" }] }, { "id" : "Extension.value[x]", "path" : "Extension.value[x]", "short" : "Value of extension", "definition" : "Value of extension - must be one of a constrained set of the data types (see [Extensibility](http://hl7.org/fhir/extensibility.html) for a list).", "min" : 1, "max" : "1", "base" : { "path" : "Extension.value[x]", "min" : 0, "max" : "1" }, "type" : [{ "code" : "string" }], "constraint" : [{ "key" : "ele-1", "severity" : "error", "human" : "All FHIR elements must have a @value or children", "expression" : "hasValue() or (children().count() > id.count())", "xpath" : "@value|f:*|h:div", "source" : "http://hl7.org/fhir/StructureDefinition/Element" }], "isModifier" : false, "isSummary" : false, "mapping" : [{ "identity" : "rim", "map" : "N/A" }] }] }, "differential" : { "element" : [{ "id" : "Extension", "path" : "Extension", "short" : "Special note about status for implementers", "definition" : "A special note for implementers about the status of the resource.", "comment" : "This is used in the build to mark that though a resource is normative, it changes with the build.", "min" : 0, "max" : "1" }, { "id" : "Extension.extension", "path" : "Extension.extension", "max" : "0" }, { "id" : "Extension.url", "path" : "Extension.url", "fixedUri" : "http://hl7.org/fhir/StructureDefinition/valueset-special-status" }, { "id" : "Extension.value[x]", "path" : "Extension.value[x]", "min" : 1, "type" : [{ "code" : "string" }] }] } }

4.4.1.659.3 Expansion

This expansion generated 01 Mar 2023

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Usage note: every effort has been made to ensure that  

See the examples full registry of value sets defined as part of FHIR.

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Explanation of the columns that may appear on this page:

Lvl	A few code lists that FHIR defines are correct and useful, but they hierarchical - each code is assigned a level. For value sets, levels are mostly used to organize codes for user convenience, but may follow code system hierarchy - see Code System for further information
Source	The source of the definition of the code (when the value set draws in codes defined elsewhere)
Code	The code (used as the code in the resource instance). If the code is in italics, this indicates that the code is not selectable ('Abstract')
Display	The display (used in the display element of a normative part Coding ). If there is no display, implementers should not simply display the code, but map the concept into their application
Definition	An explanation of the specification. meaning of the concept
Comments	Additional notes about how to use the code