Release 4B R5 Final QA

This page is part of the FHIR Specification (v4.3.0: R4B (v5.0.0-draft-final: Final QA Preview for R5 - STU see ballot notes ). The current version which supercedes this version is 5.0.0 . For a full list of available versions, see the Directory of published versions . Page versions: R5 R4B R4 R3

Sequence-example-pgx-1

Example MolecularSequence/example-pgx-1 (Narrative)

Clinical Genomics Work Group Maturity Level : N/A Standards Status : Informative Compartments : Patient

This is the narrative for the resource. See also the XML , JSON or Turtle format. This example conforms to the profile MolecularSequence .

Generated Narrative Narrative: MolecularSequence

Resource MolecularSequence "example-pgx-1"

type : dna

coordinateSystem subject : 0 Patient/example "Peter CHALMERS"

patient relative

coordinateSystem : Patient/example 0-based interval counting ( LOINC "Peter CHALMERS" #LA30100-4)

ReferenceSeqs StartingSequences

- Orientation Sequence[x] ReferenceSeqId WindowStart Strand WindowEnd WindowStart Orientation WindowEnd Strand
* sense NG_007726.3 (nuccore#NG_007726.3) watson 55227970 55227970 55227980 55227980 sense watson

Variants Edits

Observation/example-haplotype1: Target Haplotype Observation
- Start End ObservedAllele ReferenceAllele ReplacementSequence VariantPointer ReplacedSequence
* 55227976 55227977 G T

 

Other examples that reference this example:

  • Provenance/CWL Workflow

    •  

    Usage note: every effort has been made to ensure that the examples are correct and useful, but they are not a normative part of the specification.