Example of a Biopsy

@prefix fhir: <http://hl7.org/fhir/> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix sct: <http://snomed.info/id/> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .

# - resource -------------------------------------------------------------------

<http://hl7.org/fhir/Procedure/biopsy> a fhir:Procedure;
  fhir:nodeRole fhir:treeRoot;
  fhir:Resource.id [ fhir:value "biopsy"];
  fhir:DomainResource.text [
     fhir:Narrative.status [ fhir:value "generated" ];
     fhir:Narrative.div "<div xmlns=\"http://www.w3.org/1999/xhtml\">Biopsy of suspected melanoma L) arm</div>"
  ];
  fhir:Procedure.status [ fhir:value "completed"];
  fhir:Procedure.category [
     fhir:CodeableConcept.coding [
       fhir:index 0;
       a sct:103693007;
       fhir:Coding.system [ fhir:value "http://snomed.info/sct" ];
       fhir:Coding.code [ fhir:value "103693007" ];
       fhir:Coding.display [ fhir:value "Diagnostic procedure (procedure)" ]
     ];
     fhir:CodeableConcept.text [ fhir:value "Diagnostic procedure" ]
  ];
  fhir:Procedure.code [
     fhir:CodeableConcept.coding [
       fhir:index 0;
       a sct:90105005;
       fhir:Coding.system [ fhir:value "http://snomed.info/sct" ];
       fhir:Coding.code [ fhir:value "90105005" ];
       fhir:Coding.display [ fhir:value "Biopsy of soft tissue of forearm (Procedure)" ]
     ];
     fhir:CodeableConcept.text [ fhir:value "Biopsy of suspected melanoma L) arm" ]
  ];
  fhir:Procedure.subject [
     fhir:link <http://hl7.org/fhir/Patient/example>;
     fhir:Reference.reference [ fhir:value "Patient/example" ]
  ];
  fhir:Procedure.performedDateTime [ fhir:value "2014-02-03"^^xsd:date];
  fhir:Procedure.performer [
     fhir:index 0;
     fhir:Procedure.performer.actor [
       fhir:link <http://hl7.org/fhir/Practitioner/example>;
       fhir:Reference.reference [ fhir:value "Practitioner/example" ];
       fhir:Reference.display [ fhir:value "Dr Bert Biopser" ]

[a fhir:Procedure ;
  fhir:nodeRole fhir:treeRoot ;
  fhir:id [ fhir:v "biopsy"] ; # 
  fhir:text [
     fhir:status [ fhir:v "generated" ] ;
     fhir:div "<div xmlns=\"http://www.w3.org/1999/xhtml\">Biopsy of suspected melanoma L) arm</div>"
  ] ; # 
  fhir:status [ fhir:v "completed"] ; # 
  fhir:category ( [
     fhir:coding ( [
       a sct:103693007 ;
       fhir:system [ fhir:v "http://snomed.info/sct"^^xsd:anyURI ] ;
       fhir:code [ fhir:v "103693007" ] ;
       fhir:display [ fhir:v "Diagnostic procedure (procedure)" ]
     ] ) ;
     fhir:text [ fhir:v "Diagnostic procedure" ]
  ] ) ; # 
  fhir:code [
     fhir:coding ( [
       a sct:90105005 ;
       fhir:system [ fhir:v "http://snomed.info/sct"^^xsd:anyURI ] ;
       fhir:code [ fhir:v "90105005" ] ;
       fhir:display [ fhir:v "Biopsy of soft tissue of forearm (Procedure)" ]
     ] ) ;
     fhir:text [ fhir:v "Biopsy of suspected melanoma L) arm" ]
  ] ; # 
  fhir:subject [
     fhir:reference [ fhir:v "Patient/example" ]
  ] ; # 
  fhir:occurrence [ fhir:v "2014-02-03"^^xsd:date] ; # 
  fhir:recorded [ fhir:v "2014-02-03"^^xsd:date] ; # 
  fhir:performer ( [
     fhir:actor [
       fhir:reference [ fhir:v "Practitioner/example" ] ;
       fhir:display [ fhir:v "Dr Bert Biopser" ]

     ]
  ];
  fhir:Procedure.reasonCode [
     fhir:index 0;
     fhir:CodeableConcept.text [ fhir:value "Dark lesion l) forearm. getting darker last 3 months." ]
  ];
  fhir:Procedure.bodySite [
     fhir:index 0;
     fhir:CodeableConcept.coding [
       fhir:index 0;
       a sct:368225008;
       fhir:Coding.system [ fhir:value "http://snomed.info/sct" ];
       fhir:Coding.code [ fhir:value "368225008" ];
       fhir:Coding.display [ fhir:value "Entire Left Forearm" ]
     ];
     fhir:CodeableConcept.text [ fhir:value "Left forearm" ]
  ];
  fhir:Procedure.complication [
     fhir:index 0;
     fhir:CodeableConcept.coding [
       fhir:index 0;
       a sct:67750007;
       fhir:Coding.system [ fhir:value "http://snomed.info/sct" ];
       fhir:Coding.code [ fhir:value "67750007" ];
       fhir:Coding.display [ fhir:value "Ineffective airway clearance (finding)" ]
     ];
     fhir:CodeableConcept.text [ fhir:value "Ineffective airway clearance" ]
  ];
  fhir:Procedure.followUp [
     fhir:index 0;
     fhir:CodeableConcept.text [ fhir:value "Review in clinic" ]
  ];
  fhir:Procedure.note [
     fhir:index 0;
     fhir:Annotation.text [ fhir:value "Standard Biopsy" ]
  ];
  fhir:Procedure.usedCode [
     fhir:index 0;
     fhir:CodeableConcept.coding [
       fhir:index 0;
       a sct:79068005;
       fhir:Coding.system [ fhir:value "http://snomed.info/sct" ];
       fhir:Coding.code [ fhir:value "79068005" ];
       fhir:Coding.display [ fhir:value "Needle, device (physical object)" ]
     ];
     fhir:CodeableConcept.text [ fhir:value "30-guage needle" ]
  ] .

<http://hl7.org/fhir/Patient/example> a fhir:Patient .

<http://hl7.org/fhir/Practitioner/example> a fhir:Practitioner .

# - ontology header ------------------------------------------------------------

<http://hl7.org/fhir/Procedure/biopsy.ttl> a owl:Ontology;
  owl:imports fhir:fhir.ttl;
  owl:versionIRI <http://build.fhir.org/Procedure/biopsy.ttl> .

  ] ) ; # 
  fhir:reason ( [
     fhir:concept [
       fhir:text [ fhir:v "Dark lesion l) forearm. getting darker last 3 months." ]
     ]
  ] ) ; # 
  fhir:bodySite ( [
     fhir:coding ( [
       a sct:368225008 ;
       fhir:system [ fhir:v "http://snomed.info/sct"^^xsd:anyURI ] ;
       fhir:code [ fhir:v "368225008" ] ;
       fhir:display [ fhir:v "Entire Left Forearm" ]
     ] ) ;
     fhir:text [ fhir:v "Left forearm" ]
  ] ) ; # 
  fhir:complication ( [
     fhir:concept [
       fhir:coding ( [
         a sct:67750007 ;
         fhir:system [ fhir:v "http://snomed.info/sct"^^xsd:anyURI ] ;
         fhir:code [ fhir:v "67750007" ] ;
         fhir:display [ fhir:v "Ineffective airway clearance (finding)" ]
       ] ) ;
       fhir:text [ fhir:v "Ineffective airway clearance" ]
     ]
  ] ) ; # 
  fhir:followUp ( [
     fhir:text [ fhir:v "Review in clinic" ]
  ] ) ; # 
  fhir:note ( [
     fhir:text [ fhir:v "Standard Biopsy" ]
  ] ) ; # 
  fhir:used ( [
     fhir:concept [
       fhir:coding ( [
         a sct:79068005 ;
         fhir:system [ fhir:v "http://snomed.info/sct"^^xsd:anyURI ] ;
         fhir:code [ fhir:v "79068005" ] ;
         fhir:display [ fhir:v "Needle, device (physical object)" ]
       ] ) ;
       fhir:text [ fhir:v "30-guage needle" ]
     ]
  ] )] . # 


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