PGx Phenotype example Definition for Value SetTask Codes

@prefix fhir: <http://hl7.org/fhir/> .
@prefix loinc: <http://loinc.org/rdf#> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .

@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .


# - resource -------------------------------------------------------------------

<http://hl7.org/fhir/ServiceRequest/example-pgx> a fhir:ServiceRequest;
  fhir:nodeRole fhir:treeRoot;
  fhir:Resource.id [ fhir:value "example-pgx"];

[] a fhir:ValueSet;
  fhir:Resource.id [ fhir:value "task-code"];
  fhir:Resource.meta [
     fhir:Meta.lastUpdated [ fhir:value "2022-09-10T04:52:37.223+10:00" ];
     fhir:Meta.profile [ fhir:value "http://hl7.org/fhir/StructureDefinition/shareablevalueset" ]
  ];

  fhir:DomainResource.text [
     fhir:Narrative.status [ fhir:value "generated" ];
     fhir:Narrative.div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Generated Narrative with Details</b></p><p><b>id</b>: example-pgx</p><p><b>status</b>: active</p><p><b>intent</b>: original-order</p><p><b>code</b>: CYP2D6 gene targeted mutation analysis <span>(Details : {LOINC code '47403-1' = 'CYP2D6 gene mutation analysis in Blood or Tissue by Molecular genetics method Narrative', given as 'CYP2D6 gene targeted mutation analysis'})</span></p><p><b>subject</b>: <a>Patient/899962</a></p><p><b>authoredOn</b>: 10/10/2016 3:00:00 PM</p><p><b>requester</b>: <a>Practitioner/12345</a></p></div>"

     fhir:Narrative.status [ fhir:value "generated" ]

  ];
  fhir:ServiceRequest.status [ fhir:value "active"];
  fhir:ServiceRequest.intent [ fhir:value "original-order"];
  fhir:ServiceRequest.code [
     fhir:CodeableConcept.coding [
       fhir:index 0;
       a loinc:47403-1;
       fhir:Coding.system [ fhir:value "http://loinc.org" ];
       fhir:Coding.code [ fhir:value "47403-1" ];
       fhir:Coding.display [ fhir:value "CYP2D6 gene targeted mutation analysis" ]

  fhir:DomainResource.extension [
     fhir:Extension.url [ fhir:value "http://hl7.org/fhir/StructureDefinition/structuredefinition-wg" ];
     fhir:Extension.value [ fhir:value "oo" ]
  ], [
     fhir:Extension.url [ fhir:value "http://hl7.org/fhir/StructureDefinition/structuredefinition-standards-status" ];
     fhir:Extension.value [ fhir:value "draft" ]
  ], [
     fhir:Extension.url [ fhir:value "http://hl7.org/fhir/StructureDefinition/structuredefinition-fmm" ];
     fhir:Extension.value [ fhir:value "1" ]
  ];
  fhir:CanonicalResource.url [ fhir:value "http://hl7.org/fhir/ValueSet/task-code"];
  fhir:CanonicalResource.identifier [
     fhir:Identifier.system [ fhir:value "urn:ietf:rfc:3986" ];
     fhir:Identifier.value [ fhir:value "urn:oid:2.16.840.1.113883.4.642.3.1396" ]
  ];
  fhir:CanonicalResource.version [ fhir:value "5.0.0-ballot"];
  fhir:CanonicalResource.name [ fhir:value "TaskCode"];
  fhir:CanonicalResource.title [ fhir:value "Task Codes"];
  fhir:CanonicalResource.status [ fhir:value "active"];
  fhir:CanonicalResource.experimental [ fhir:value "true"];
  fhir:CanonicalResource.publisher [ fhir:value "FHIR Project team"];
  fhir:CanonicalResource.contact [
     fhir:ContactDetail.telecom [
       fhir:ContactPoint.system [ fhir:value "url" ];
       fhir:ContactPoint.value [ fhir:value "http://hl7.org/fhir" ]

     ]
  ];
  fhir:ServiceRequest.subject [
     fhir:link <http://hl7.org/fhir/Patient/899962>;
     fhir:Reference.reference [ fhir:value "Patient/899962" ]

  fhir:CanonicalResource.description [ fhir:value "Codes indicating the type of action that is expected to be performed"];
  fhir:ValueSet.url [ fhir:value "http://hl7.org/fhir/ValueSet/task-code"];
  fhir:ValueSet.identifier [
     fhir:Identifier.system [ fhir:value "urn:ietf:rfc:3986" ];
     fhir:Identifier.value [ fhir:value "urn:oid:2.16.840.1.113883.4.642.3.1396" ]

  ];
  fhir:ServiceRequest.authoredOn [ fhir:value "2016-10-10T15:00:00-07:00"^^xsd:dateTime];
  fhir:ServiceRequest.requester [
     fhir:link <http://hl7.org/fhir/Practitioner/12345>;
     fhir:Reference.reference [ fhir:value "Practitioner/12345" ]

  fhir:ValueSet.version [ fhir:value "5.0.0-ballot"];
  fhir:ValueSet.name [ fhir:value "TaskCode"];
  fhir:ValueSet.title [ fhir:value "Task Codes"];
  fhir:ValueSet.status [ fhir:value "active"];
  fhir:ValueSet.experimental [ fhir:value "true"];
  fhir:ValueSet.publisher [ fhir:value "FHIR Project team"];
  fhir:ValueSet.contact [
     fhir:ContactDetail.telecom [
       fhir:ContactPoint.system [ fhir:value "url" ];
       fhir:ContactPoint.value [ fhir:value "http://hl7.org/fhir" ]
     ]
  ];
  fhir:ValueSet.description [ fhir:value "Codes indicating the type of action that is expected to be performed"];
  fhir:ValueSet.compose [
     fhir:ValueSetComposeComponent.include [
       fhir:ConceptSetComponent.system [ fhir:value "http://hl7.org/fhir/CodeSystem/task-code" ]
     ]

  ] .

<http://hl7.org/fhir/Patient/899962> a fhir:Patient .

<http://hl7.org/fhir/Practitioner/12345> a fhir:Practitioner .

# - ontology header ------------------------------------------------------------

<http://hl7.org/fhir/ServiceRequest/example-pgx.ttl> a owl:Ontology;
  owl:imports fhir:fhir.ttl;
  owl:versionIRI <http://build.fhir.org/ServiceRequest/example-pgx.ttl> .


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