FHIR Release 3 (STU) 5 Ballot

This page is part of the FHIR Specification (v3.0.2: STU (v5.0.0-ballot: R5 Ballot - see ballot notes 3). ). The current version which supercedes this version is 5.0.0 . For a full list of available versions, see the Directory of published versions . Page versions: R5 Content Examples Detailed Descriptions Mappings Profiles & Extensions R4B 10.5.6 R4 Resource Sequence - Examples R3

Example TestReport/testreport-example (Turtle)

Clinical Genomics FHIR Infrastructure Work Group Maturity Level : N/A Ballot Standards Status : Informative Compartments : Not linked to any defined compartments
Example List: Simple sequence example example XML JSON Turtle Sequence example from precisionFDA fda-example XML JSON Turtle Example of representing complex variants in Sequence Resource sequence-complex-variant XML JSON Turtle Example of a single varaint on a reference Sequence related to a haplotype observation in PGx example example-pgx-1 XML JSON Turtle Example of another single varaint on a reference Sequence related to a haplotype observation in PGx example, which will form with the other haplotype data to be a diplotype observation. example-pgx-2 XML JSON Turtle Example of a TPMT SNP data that support a haplotype observation example-TPMT-one XML JSON Turtle Example of another TPMT SNP data that support a haplotype observation example-TPMT-two XML JSON Turtle Sequence Graphic example-1 graphic-example-1 XML JSON Turtle Sequence Graphic example-2 graphic-example-2 XML JSON Turtle Sequence Graphic example-3 graphic-example-3 XML JSON Turtle

Raw Turtle Example of a record with 0-based coordinatesystem coord-0-base XML JSON Turtle (+ also see Turtle/RDF Format Specification )

General TestReport Example of a record with 1-based coordinatesystem coord-1-base XML JSON Turtle Sequence example for vcf comparison on precisionFDA fda-vcf-comparison XML JSON Turtle Sequence example for vcf and Hap.py comparison on precisionFDA fda-vcfeval-comparison XML JSON Turtle  

@prefix fhir: <http://hl7.org/fhir/> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .

# - resource -------------------------------------------------------------------

[a fhir:TestReport;
  fhir:nodeRole fhir:treeRoot;
  fhir:Resource.id [ fhir:value "testreport-example"];
  fhir:DomainResource.text [
     fhir:Narrative.status [ fhir:value "generated" ];
     fhir:Narrative.div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Generated Narrative: TestReport</b><a name=\"testreport-example\"> </a></p><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\">Resource TestReport &quot;testreport-example&quot; </p></div><p><b>identifier</b>: id: urn:oid:1.3.6.1.4.1.21367.2005.3.7.9878</p><p><b>name</b>: TestReport Example for TestScript Example</p><p><b>status</b>: completed</p><p><b>testScript</b>: <a href=\"http://example.com/TestScript/testscript-example\">http://example.com/TestScript/testscript-example</a></p><p><b>result</b>: pass</p><p><b>score</b>: 100.0</p><p><b>tester</b>: HL7 Execution Engine</p><p><b>issued</b>: 2016-10-07T08:25:34-05:00</p><blockquote><p><b>participant</b></p><p><b>type</b>: test-engine</p><p><b>uri</b>: <a href=\"http://projectcrucible.org\">http://projectcrucible.org</a></p><p><b>display</b>: Crucible</p></blockquote><blockquote><p><b>participant</b></p><p><b>type</b>: server</p><p><b>uri</b>: <a href=\"http://fhir3.healthintersections.com.au/open\">http://fhir3.healthintersections.com.au/open</a></p><p><b>display</b>: HealthIntersections STU3</p></blockquote><blockquote><p><b>setup</b></p><blockquote><p><b>action</b></p><h3>Operations</h3><table class=\"grid\"><tr><td>-</td><td><b>Result</b></td><td><b>Message</b></td><td><b>Detail</b></td></tr><tr><td>*</td><td>pass</td><td>DELETE Patient</td><td><a href=\"http://projectcrucible.org/permalink/1\">http://projectcrucible.org/permalink/1</a></td></tr></table></blockquote><blockquote><p><b>action</b></p><h3>Asserts</h3><table class=\"grid\"><tr><td>-</td><td><b>Result</b></td><td><b>Message</b></td><td><b>Detail</b></td></tr><tr><td>*</td><td>pass</td><td>HTTP 204</td><td>http://projectcrucible.org/permalink/1</td></tr></table></blockquote><blockquote><p><b>action</b></p><h3>Operations</h3><table class=\"grid\"><tr><td>-</td><td><b>Result</b></td><td><b>Message</b></td><td><b>Detail</b></td></tr><tr><td>*</td><td>pass</td><td>POST Patient/fixture-patient-create</td><td><a href=\"http://projectcrucible.org/permalink/1\">http://projectcrucible.org/permalink/1</a></td></tr></table></blockquote><blockquote><p><b>action</b></p><h3>Asserts</h3><table class=\"grid\"><tr><td>-</td><td><b>Result</b></td><td><b>Message</b></td><td><b>Detail</b></td></tr><tr><td>*</td><td>pass</td><td>HTTP 201</td><td>http://projectcrucible.org/permalink/1</td></tr></table></blockquote></blockquote><blockquote><p><b>test</b></p><p><b>name</b>: Read Patient</p><p><b>description</b>: Read a Patient and validate response.</p><blockquote><p><b>action</b></p><h3>Operations</h3><table class=\"grid\"><tr><td>-</td><td><b>Result</b></td><td><b>Message</b></td><td><b>Detail</b></td></tr><tr><td>*</td><td>pass</td><td>GET Patient/fixture-patient-create</td><td><a href=\"http://projectcrucible.org/permalink/2\">http://projectcrucible.org/permalink/2</a></td></tr></table></blockquote><blockquote><p><b>action</b></p><h3>Asserts</h3><table class=\"grid\"><tr><td>-</td><td><b>Result</b></td><td><b>Message</b></td><td><b>Detail</b></td></tr><tr><td>*</td><td>pass</td><td>HTTP 200</td><td>http://projectcrucible.org/permalink/2</td></tr></table></blockquote><blockquote><p><b>action</b></p><h3>Asserts</h3><table class=\"grid\"><tr><td>-</td><td><b>Result</b></td><td><b>Message</b></td><td><b>Detail</b></td></tr><tr><td>*</td><td>pass</td><td>Last-Modified Present</td><td>http://projectcrucible.org/permalink/2</td></tr></table></blockquote><blockquote><p><b>action</b></p><h3>Asserts</h3><table class=\"grid\"><tr><td>-</td><td><b>Result</b></td><td><b>Message</b></td><td><b>Detail</b></td></tr><tr><td>*</td><td>pass</td><td>Response is Patient</td><td>http://projectcrucible.org/permalink/2</td></tr></table></blockquote><blockquote><p><b>action</b></p><h3>Asserts</h3><table class=\"grid\"><tr><td>-</td><td><b>Result</b></td><td><b>Message</b></td><td><b>Detail</b></td></tr><tr><td>*</td><td>pass</td><td>Response validates</td><td>http://projectcrucible.org/permalink/2</td></tr></table></blockquote><blockquote><p><b>action</b></p><h3>Asserts</h3><table class=\"grid\"><tr><td>-</td><td><b>Result</b></td><td><b>Message</b></td><td><b>Detail</b></td></tr><tr><td>*</td><td>pass</td><td>Patient.name.family 'Chalmers'</td><td>http://projectcrucible.org/permalink/2</td></tr></table></blockquote><blockquote><p><b>action</b></p><h3>Asserts</h3><table class=\"grid\"><tr><td>-</td><td><b>Result</b></td><td><b>Message</b></td><td><b>Detail</b></td></tr><tr><td>*</td><td>pass</td><td>Patient.name.given 'Peter'</td><td>http://projectcrucible.org/permalink/2</td></tr></table></blockquote><blockquote><p><b>action</b></p><h3>Asserts</h3><table class=\"grid\"><tr><td>-</td><td><b>Result</b></td><td><b>Message</b></td><td><b>Detail</b></td></tr><tr><td>*</td><td>pass</td><td>Patient.name.family 'Chalmers'</td><td>http://projectcrucible.org/permalink/2</td></tr></table></blockquote><blockquote><p><b>action</b></p><h3>Asserts</h3><table class=\"grid\"><tr><td>-</td><td><b>Result</b></td><td><b>Message</b></td><td><b>Detail</b></td></tr><tr><td>*</td><td>pass</td><td>Patient.name.family 'Chalmers'</td><td>http://projectcrucible.org/permalink/2</td></tr></table></blockquote><blockquote><p><b>action</b></p><h3>Asserts</h3><table class=\"grid\"><tr><td>-</td><td><b>Result</b></td><td><b>Message</b></td><td><b>Detail</b></td></tr><tr><td>*</td><td>pass</td><td>Patient expected values.</td><td>http://projectcrucible.org/permalink/2</td></tr></table></blockquote></blockquote><blockquote><p><b>teardown</b></p><blockquote><p><b>action</b></p><h3>Operations</h3><table class=\"grid\"><tr><td>-</td><td><b>Result</b></td><td><b>Message</b></td><td><b>Detail</b></td></tr><tr><td>*</td><td>pass</td><td>DELETE Patient/fixture-patient-create.</td><td><a href=\"http://projectcrucible.org/permalink/3\">http://projectcrucible.org/permalink/3</a></td></tr></table></blockquote></blockquote></div>"
  ];
  fhir:TestReport.identifier [
     fhir:Identifier.system [ fhir:value "urn:ietf:rfc:3986" ];
     fhir:Identifier.value [ fhir:value "urn:oid:1.3.6.1.4.1.21367.2005.3.7.9878" ]
  ];
  fhir:TestReport.name [ fhir:value "TestReport Example for TestScript Example"];
  fhir:TestReport.status [ fhir:value "completed"];
  fhir:TestReport.testScript [
     fhir:value "http://example.com/TestScript/testscript-example";
     fhir:link <http://example.com/TestScript/testscript-example>
  ];
  fhir:TestReport.result [ fhir:value "pass"];
  fhir:TestReport.score [ fhir:value "100.0"^^xsd:decimal];
  fhir:TestReport.tester [ fhir:value "HL7 Execution Engine"];
  fhir:TestReport.issued [ fhir:value "2016-10-07T08:25:34-05:00"^^xsd:dateTime];
  fhir:TestReport.participant [
     fhir:index 0;
     fhir:TestReport.participant.type [ fhir:value "test-engine" ];
     fhir:TestReport.participant.uri [ fhir:value "http://projectcrucible.org" ];
     fhir:TestReport.participant.display [ fhir:value "Crucible" ]
  ], [
     fhir:index 1;
     fhir:TestReport.participant.type [ fhir:value "server" ];
     fhir:TestReport.participant.uri [ fhir:value "http://fhir3.healthintersections.com.au/open" ];
     fhir:TestReport.participant.display [ fhir:value "HealthIntersections STU3" ]
  ];
  fhir:TestReport.setup [
     fhir:TestReport.setup.action [
       fhir:index 0;
       fhir:TestReport.setup.action.operation [
         fhir:TestReport.setup.action.operation.result [ fhir:value "pass" ];
         fhir:TestReport.setup.action.operation.message [ fhir:value "DELETE Patient" ];
         fhir:TestReport.setup.action.operation.detail [ fhir:value "http://projectcrucible.org/permalink/1" ]
       ]
     ], [
       fhir:index 1;
       fhir:TestReport.setup.action.assert [
         fhir:TestReport.setup.action.assert.result [ fhir:value "pass" ];
         fhir:TestReport.setup.action.assert.message [ fhir:value "HTTP 204" ];
         fhir:TestReport.setup.action.assert.detail [ fhir:value "http://projectcrucible.org/permalink/1" ]
       ]
     ], [
       fhir:index 2;
       fhir:TestReport.setup.action.operation [
         fhir:TestReport.setup.action.operation.result [ fhir:value "pass" ];
         fhir:TestReport.setup.action.operation.message [ fhir:value "POST Patient/fixture-patient-create" ];
         fhir:TestReport.setup.action.operation.detail [ fhir:value "http://projectcrucible.org/permalink/1" ]
       ]
     ], [
       fhir:index 3;
       fhir:TestReport.setup.action.assert [
         fhir:TestReport.setup.action.assert.result [ fhir:value "pass" ];
         fhir:TestReport.setup.action.assert.message [ fhir:value "HTTP 201" ];
         fhir:TestReport.setup.action.assert.detail [ fhir:value "http://projectcrucible.org/permalink/1" ]
       ]
     ]
  ];
  fhir:TestReport.test [
     fhir:index 0;
     fhir:Element.id [ fhir:value "01-ReadPatient" ];
     fhir:TestReport.test.name [ fhir:value "Read Patient" ];
     fhir:TestReport.test.description [ fhir:value "Read a Patient and validate response." ];
     fhir:TestReport.test.action [
       fhir:index 0;
       fhir:TestReport.test.action.operation [
         fhir:TestReport.setup.action.operation.result [ fhir:value "pass" ];
         fhir:TestReport.setup.action.operation.message [ fhir:value "GET Patient/fixture-patient-create" ];
         fhir:TestReport.setup.action.operation.detail [ fhir:value "http://projectcrucible.org/permalink/2" ]
       ]
     ], [
       fhir:index 1;
       fhir:TestReport.test.action.assert [
         fhir:TestReport.setup.action.assert.result [ fhir:value "pass" ];
         fhir:TestReport.setup.action.assert.message [ fhir:value "HTTP 200" ];
         fhir:TestReport.setup.action.assert.detail [ fhir:value "http://projectcrucible.org/permalink/2" ]
       ]
     ], [
       fhir:index 2;
       fhir:TestReport.test.action.assert [
         fhir:TestReport.setup.action.assert.result [ fhir:value "pass" ];
         fhir:TestReport.setup.action.assert.message [ fhir:value "Last-Modified Present" ];
         fhir:TestReport.setup.action.assert.detail [ fhir:value "http://projectcrucible.org/permalink/2" ]
       ]
     ], [
       fhir:index 3;
       fhir:TestReport.test.action.assert [
         fhir:TestReport.setup.action.assert.result [ fhir:value "pass" ];
         fhir:TestReport.setup.action.assert.message [ fhir:value "Response is Patient" ];
         fhir:TestReport.setup.action.assert.detail [ fhir:value "http://projectcrucible.org/permalink/2" ]
       ]
     ], [
       fhir:index 4;
       fhir:TestReport.test.action.assert [
         fhir:TestReport.setup.action.assert.result [ fhir:value "pass" ];
         fhir:TestReport.setup.action.assert.message [ fhir:value "Response validates" ];
         fhir:TestReport.setup.action.assert.detail [ fhir:value "http://projectcrucible.org/permalink/2" ]
       ]
     ], [
       fhir:index 5;
       fhir:TestReport.test.action.assert [
         fhir:TestReport.setup.action.assert.result [ fhir:value "pass" ];
         fhir:TestReport.setup.action.assert.message [ fhir:value "Patient.name.family 'Chalmers'" ];
         fhir:TestReport.setup.action.assert.detail [ fhir:value "http://projectcrucible.org/permalink/2" ]
       ]
     ], [
       fhir:index 6;
       fhir:TestReport.test.action.assert [
         fhir:TestReport.setup.action.assert.result [ fhir:value "pass" ];
         fhir:TestReport.setup.action.assert.message [ fhir:value "Patient.name.given 'Peter'" ];
         fhir:TestReport.setup.action.assert.detail [ fhir:value "http://projectcrucible.org/permalink/2" ]
       ]
     ], [
       fhir:index 7;
       fhir:TestReport.test.action.assert [
         fhir:TestReport.setup.action.assert.result [ fhir:value "pass" ];
         fhir:TestReport.setup.action.assert.message [ fhir:value "Patient.name.family 'Chalmers'" ];
         fhir:TestReport.setup.action.assert.detail [ fhir:value "http://projectcrucible.org/permalink/2" ]
       ]
     ], [
       fhir:index 8;
       fhir:TestReport.test.action.assert [
         fhir:TestReport.setup.action.assert.result [ fhir:value "pass" ];
         fhir:TestReport.setup.action.assert.message [ fhir:value "Patient.name.family 'Chalmers'" ];
         fhir:TestReport.setup.action.assert.detail [ fhir:value "http://projectcrucible.org/permalink/2" ]
       ]
     ], [
       fhir:index 9;
       fhir:TestReport.test.action.assert [
         fhir:TestReport.setup.action.assert.result [ fhir:value "pass" ];
         fhir:TestReport.setup.action.assert.message [ fhir:value "Patient expected values." ];
         fhir:TestReport.setup.action.assert.detail [ fhir:value "http://projectcrucible.org/permalink/2" ]
       ]
     ]
  ];
  fhir:TestReport.teardown [
     fhir:TestReport.teardown.action [
       fhir:index 0;
       fhir:TestReport.teardown.action.operation [
         fhir:TestReport.setup.action.operation.result [ fhir:value "pass" ];
         fhir:TestReport.setup.action.operation.message [ fhir:value "DELETE Patient/fixture-patient-create." ];
         fhir:TestReport.setup.action.operation.detail [ fhir:value "http://projectcrucible.org/permalink/3" ]
       ]
     ]
  ]] .

# - ontology header ------------------------------------------------------------

[a owl:Ontology;
  owl:imports fhir:fhir.ttl] .

# -------------------------------------------------------------------------------------


Usage note: every effort has been made to ensure that the examples are correct and useful, but they are not a normative part of the specification.