This
page
is
part
of
the
FHIR
Specification
(v4.0.1:
R4
(v5.0.0-ballot:
R5
Ballot
-
Mixed
Normative
and
STU
see
ballot
notes
)
in
it's
permanent
home
(it
will
always
be
available
at
this
URL).
).
The
current
version
which
supercedes
this
version
is
5.0.0
.
For
a
full
list
of
available
versions,
see
the
Directory
of
published
versions
.
Page
versions:
R4B
R5
R4
R3
Work
Group
|
Maturity Level : N/A | Standards Status : Informative |
Compartments
:
|
This
is
the
narrative
for
the
resource.
See
also
the
XML
,
JSON
or
Turtle
format.
This
example
conforms
to
the
profile
Observation-genetics
(FHIR
Specification
Core)).
Generated
Narrative
with
Details
id
:
example-haplotype1
status
:
unknown
code
:
Genetic
analysis
master
panel--
This
is
the
parent
OBR
for
the
panel
holding
all
of
the
associated
observations
that
can
be
reported
with
a
molecular
genetics
analysis
result.
(Details
:
{LOINC
code
'55233-1'
=
'Genetic
analysis
master
panel
-
Blood
or
Tissue
by
Molecular
genetics
method',
given
as
'Genetic
analysis
master
panel--
This
is
the
parent
OBR
for
the
panel
holding
all
representation
of
the
associated
observations
that
can
be
reported
with
a
molecular
genetics
analysis
result.'})
subject
:
J***********
C***********
issued
:
03/04/2013
3:30:10
PM
value
:
*35B
(Details
:
{http://pharmakb.org
code
'PA165971587'
=
'PA165971587',
given
as
'*35B'})
specimen
:
Molecular
Specimen
ID:
MLD45-Z4-1234
derivedFrom
:
MolecularSequence/example-pgx-1
MolecularSequence/example-pgx-2
Usage
note:
every
effort
has
been
made
to
ensure
that
the
examples
are
correct
and
useful,
but
they
are
not
json
schema
for
SubstanceReferenceInformation,
which
is
just
a
normative
part
of
the
specification.
full
JSON
Schema
.
{
"$schema": "http://json-schema.org/draft-06/schema#",
"id": "http://hl7.org/fhir/json-schema/SubstanceReferenceInformation",
"$ref": "#/definitions/SubstanceReferenceInformation",
"description": "see http://hl7.org/fhir/json.html#schema for information about the FHIR Json Schemas",
"definitions": {
"SubstanceReferenceInformation": {
"description": "Todo.",
"properties": {
"resourceType": {
"description": "This is a SubstanceReferenceInformation resource",
"const": "SubstanceReferenceInformation"
},
"id": {
"description": "The logical id of the resource, as used in the URL for the resource. Once assigned, this value never changes.",
"$ref": "id.schema.json#/definitions/id"
},
"meta": {
"description": "The metadata about the resource. This is content that is maintained by the infrastructure. Changes to the content might not always be associated with version changes to the resource.",
"$ref": "Meta.schema.json#/definitions/Meta"
},
"implicitRules": {
"description": "A reference to a set of rules that were followed when the resource was constructed, and which must be understood when processing the content. Often, this is a reference to an implementation guide that defines the special rules along with other profiles etc.",
"$ref": "#/definitions/uri"
},
"_implicitRules": {
"description": "Extensions for implicitRules",
"$ref": "Element.schema.json#/definitions/Element"
},
"language": {
"description": "The base language in which the resource is written.",
"$ref": "#/definitions/code"
},
"_language": {
"description": "Extensions for language",
"$ref": "Element.schema.json#/definitions/Element"
},
"text": {
"description": "A human-readable narrative that contains a summary of the resource and can be used to represent the content of the resource to a human. The narrative need not encode all the structured data, but is required to contain sufficient detail to make it \"clinically safe\" for a human to just read the narrative. Resource definitions may define what content should be represented in the narrative to ensure clinical safety.",
"$ref": "Narrative.schema.json#/definitions/Narrative"
},
"contained": {
"description": "These resources do not have an independent existence apart from the resource that contains them - they cannot be identified independently, nor can they have their own independent transaction scope. This is allowed to be a Parameters resource if and only if it is referenced by a resource that provides context/meaning.",
"items": {
"$ref": "ResourceList.schema.json#/definitions/ResourceList"
},
"type": "array"
},
"extension": {
"description": "May be used to represent additional information that is not part of the basic definition of the resource. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"items": {
"$ref": "Extension.schema.json#/definitions/Extension"
},
"type": "array"
},
"modifierExtension": {
"description": "May be used to represent additional information that is not part of the basic definition of the resource and that modifies the understanding of the element that contains it and/or the understanding of the containing element\u0027s descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer is allowed to define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions.\n\nModifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).",
"items": {
"$ref": "Extension.schema.json#/definitions/Extension"
},
"type": "array"
},
"comment": {
"description": "Todo.",
"$ref": "#/definitions/string"
},
"_comment": {
"description": "Extensions for comment",
"$ref": "Element.schema.json#/definitions/Element"
},
"gene": {
"description": "Todo.",
"items": {
"$ref": "#/definitions/SubstanceReferenceInformation_Gene"
},
"type": "array"
},
"geneElement": {
"description": "Todo.",
"items": {
"$ref": "#/definitions/SubstanceReferenceInformation_GeneElement"
},
"type": "array"
},
"target": {
"description": "Todo.",
"items": {
"$ref": "#/definitions/SubstanceReferenceInformation_Target"
},
"type": "array"
}
},
"type": "object",
"additionalProperties": false,
"required": [
"resourceType"
]
},
"SubstanceReferenceInformation_Gene": {
"description": "Todo.",
"properties": {
"id": {
"description": "Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
"$ref": "string.schema.json#/definitions/string"
},
"extension": {
"description": "May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"items": {
"$ref": "Extension.schema.json#/definitions/Extension"
},
"type": "array"
},
"modifierExtension": {
"description": "May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element\u0027s descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions.\n\nModifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).",
"items": {
"$ref": "Extension.schema.json#/definitions/Extension"
},
"type": "array"
},
"geneSequenceOrigin": {
"description": "Todo.",
"$ref": "CodeableConcept.schema.json#/definitions/CodeableConcept"
},
"gene": {
"description": "Todo.",
"$ref": "CodeableConcept.schema.json#/definitions/CodeableConcept"
},
"source": {
"description": "Todo.",
"items": {
"$ref": "Reference.schema.json#/definitions/Reference"
},
"type": "array"
}
},
"type": "object",
"additionalProperties": false
},
"SubstanceReferenceInformation_GeneElement": {
"description": "Todo.",
"properties": {
"id": {
"description": "Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
"$ref": "string.schema.json#/definitions/string"
},
"extension": {
"description": "May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"items": {
"$ref": "Extension.schema.json#/definitions/Extension"
},
"type": "array"
},
"modifierExtension": {
"description": "May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element\u0027s descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions.\n\nModifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).",
"items": {
"$ref": "Extension.schema.json#/definitions/Extension"
},
"type": "array"
},
"type": {
"description": "Todo.",
"$ref": "CodeableConcept.schema.json#/definitions/CodeableConcept"
},
"element": {
"description": "Todo.",
"$ref": "Identifier.schema.json#/definitions/Identifier"
},
"source": {
"description": "Todo.",
"items": {
"$ref": "Reference.schema.json#/definitions/Reference"
},
"type": "array"
}
},
"type": "object",
"additionalProperties": false
},
"SubstanceReferenceInformation_Target": {
"description": "Todo.",
"properties": {
"id": {
"description": "Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
"$ref": "string.schema.json#/definitions/string"
},
"extension": {
"description": "May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"items": {
"$ref": "Extension.schema.json#/definitions/Extension"
},
"type": "array"
},
"modifierExtension": {
"description": "May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element\u0027s descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions.\n\nModifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).",
"items": {
"$ref": "Extension.schema.json#/definitions/Extension"
},
"type": "array"
},
"target": {
"description": "Todo.",
"$ref": "Identifier.schema.json#/definitions/Identifier"
},
"type": {
"description": "Todo.",
"$ref": "CodeableConcept.schema.json#/definitions/CodeableConcept"
},
"interaction": {
"description": "Todo.",
"$ref": "CodeableConcept.schema.json#/definitions/CodeableConcept"
},
"organism": {
"description": "Todo.",
"$ref": "CodeableConcept.schema.json#/definitions/CodeableConcept"
},
"organismType": {
"description": "Todo.",
"$ref": "CodeableConcept.schema.json#/definitions/CodeableConcept"
},
"amountQuantity": {
"description": "Todo.",
"$ref": "Quantity.schema.json#/definitions/Quantity"
},
"amountRange": {
"description": "Todo.",
"$ref": "Range.schema.json#/definitions/Range"
},
"amountString": {
"description": "Todo.",
"pattern": "^[ \\r\\n\\t\\S]+$",
"type": "string"
},
"_amountString": {
"description": "Extensions for amountString",
"$ref": "Element.schema.json#/definitions/Element"
},
"amountType": {
"description": "Todo.",
"$ref": "CodeableConcept.schema.json#/definitions/CodeableConcept"
},
"source": {
"description": "Todo.",
"items": {
"$ref": "Reference.schema.json#/definitions/Reference"
},
"type": "array"
}
},
"type": "object",
"additionalProperties": false
}
}
}