Release 4B 5 Ballot

This page is part of the FHIR Specification (v4.3.0: R4B (v5.0.0-ballot: R5 Ballot - STU see ballot notes ). The current version which supercedes this version is 5.0.0 . For a full list of available versions, see the Directory of published versions . Page versions: R5 R4B R4

10.6.13 10.7.19 Resource MolecularSequence - Maturity Dependency View

Clinical Genomics icon Work Group Maturity Level : 1   Trial Use Compartments : Patient

Dependency Graph for MolecularSequence FMM level 1

coordinateSystem 1..1 integer orientation 0..1 code 0..1 observedAllele 0..1 string referenceAllele 0..1 string start 0..1 integer end 0..1 integer precision 0..1 roc 0..1 precision 0..* decimal url 0..1 uri name 0..1 string datasetId 0..1 string variantType 0..1 CodeableConcept Binding Error: Unable to resolve vs 'http://loinc.org/vs/LL379-9' to check dependencies inner 0..1 BackboneElement
Name Card. Type Dependency Analysis
. . MolecularSequence DomainResource
. . . identifier 0..* Identifier
. . . type 0..1 code
. . patient . subject 0..1 Reference ( Patient | Group | Device | Location | Organization | Procedure | Practitioner | Medication | Substance | BiologicallyDerivedProduct | NutritionProduct ) Type Warning: (Group = FMM0-Trial Use vs. Element = FMM1-Trial Use)
. . . device 0..1 Reference ( Device )
. . . performer 0..1 Reference ( Organization )
. . quantity 0..1 Quantity referenceSeq 0..1 BackboneElement chromosome 0..1 CodeableConcept . genomeBuild literal 0..1 string
. . . referenceSeqId 0..1 CodeableConcept referenceSeqPointer 0..1 Reference ( MolecularSequence ) referenceSeqString 0..1 string strand 0..1 code windowStart 0..1 integer windowEnd formatted 0..1 0..* integer Attachment
. . . variant relative 0..* BackboneElement
. . . start . coordinateSystem 1..1 integer CodeableConcept Binding Error: Unable to resolve vs 'http://loinc.org/LL5323-2/' to check dependencies
. . . . end ordinalPosition 0..1 integer
. . . cigar . sequenceRange 0..1 string variantPointer Range 0..1 Reference ( Observation )
. observedSeq 0..1 string . . . quality startingSequence 0..* 0..1 BackboneElement
. type 1..1 code . . . standardSequence . genomeAssembly 0..1 CodeableConcept Binding Error: Unable to resolve vs 'http://loinc.org/LL1040-6/' to check dependencies
. score 0..1 Quantity . . . method . chromosome 0..1 CodeableConcept Binding Error: Unable to resolve vs 'http://loinc.org/LL2938-0/' to check dependencies
. truthTP 0..1 decimal . . . queryTP . sequence[x] 0..1 decimal
. truthFN 0..1 decimal . . queryFP 0..1 decimal . . gtFP 0..1 decimal . sequenceCodeableConcept decimal CodeableConcept
. recall 0..1 decimal . . . . . fScore 0..1 decimal sequenceString BackboneElement string
. . score . . . 0..* . sequenceReference integer numTP Reference 0..* integer ( MolecularSequence
. . numFP 0..* integer . . . numFN windowStart 0..* 0..1 integer
. . sensitivity 0..* decimal . fMeasure 0..* decimal . . readCoverage windowEnd 0..1 integer
. repository 0..* BackboneElement . . . . type orientation 1..1 0..1 code
. variantsetId 0..1 string . . . . readsetId strand 0..1 string code
. pointer 0..* Reference ( MolecularSequence ) . . . structureVariant edit 0..* BackboneElement
. . exact 0..1 boolean . . . length start 0..1 integer
. . outer 0..1 BackboneElement . . . start 0..1 integer end 0..1 integer
. . . . . start replacementSequence 0..1 integer string
. . . . . end replacedSequence 0..1 integer string