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Raw Turtle (+ also see Turtle/RDF Format Specification )
Provenance
example
for
cwl
workflow
project
Presentation
State
Selection
@prefix fhir: <http://hl7.org/fhir/> . @prefix owl: <http://www.w3.org/2002/07/owl#> . @prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> . @prefix xsd: <http://www.w3.org/2001/XMLSchema#> . # - resource -------------------------------------------------------------------<http://hl7.org/fhir/Provenance/example-cwl> a fhir:Provenance;[a fhir:ImagingSelection; fhir:nodeRole fhir:treeRoot;fhir:Resource.id [ fhir:value "example-cwl"];fhir:Resource.id [ fhir:value "example-presentation-state-selection"]; fhir:DomainResource.text [ fhir:Narrative.status [ fhir:value "generated" ];fhir:Narrative.div "<div xmlns=\"http://www.w3.org/1999/xhtml\">\n <p>\n <b>Generated Narrative with Details</b>\n </p><p>\n <b>id</b>: cwl-example</p><p>\n <b>target</b>: <a href=\"http://build.fhir.org/sequence-example-pgx-1.html\">MolecularSequence/example-pgx-1</a>\n </p><p>\n <b>period</b>: Nov 30, 2016 --> (ongoing)</p><p>\n <b>recorded</b>: Dec 1, 2016 8:12:14 AM</p><p>\n <b>reason</b>: profiling Short Tandem Repeats (STRs) from high throughput sequencing data. (Details:\n [not stated] code null = 'null', stated as 'profiling Short Tandem Repeats (STRs) from\n high throughput sequencing data.')</p>\n <h3>Agents</h3>\n <table>\n <tr>\n <td>-</td>\n <td>\n <b>Role</b>\n </td>\n <td>\n <b>Who</b>\n </td>\n </tr>\n <tr>\n <td>*</td>\n <td>Author (Details: http://hl7.org/fhir/provenance-participant-role code author = 'Author',\n stated as 'null')</td>\n <td>\n <a href=\"http://build.fhir.org/patient-example.html\">Patient/example</a>\n </td>\n </tr>\n </table>\n <h3>Entities</h3>\n <table>\n <tr>\n <td>-</td>\n <td>\n <b>Role</b>\n </td>\n <td>\n <b>Reference</b>\n </td>\n </tr>\n <tr>\n <td>*</td>\n <td>source</td>\n <td>\n <a href=\"https://github.com/common-workflow-language/workflows/blob/master/workflows/lobSTR/lobSTR-workflow.cwl\">CWL example</a>\n </td>\n </tr>\n </table>\n </div>"fhir:Narrative.div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Generated Narrative: ImagingSelection</b><a name=\"example-presentation-state-selection\"> </a></p><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\">Resource ImagingSelection "example-presentation-state-selection" </p></div><p><b>identifier</b>: id: urn:oid:1.2.840.113747.20080222.104120739293836151163903631439818.2.1</p><p><b>status</b>: available</p><p><b>subject</b>: <span/></p><p><b>code</b>: Referenced DICOM Grayscale Softcopy Presentation State <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> ()</span></p><p><b>studyUid</b>: 1.2.840.113747.20080222.104120739293836153163903631439818</p><p><b>derivedFrom</b>: <span/></p><p><b>seriesUid</b>: 1.2.840.113747.20080222.104120739293836151283903631439818.1</p><p><b>frameOfReferenceUid</b>: 1.2.840.113747.20080222.104120739293289003163903631439818.0</p><p><b>focus</b>: <a href=\"imagingselection-example-basic-image-selection.html\">ImagingSelection/example-basic-image-selection</a></p><h3>Instances</h3><table class=\"grid\"><tr><td>-</td><td><b>Uid</b></td><td><b>SopClass</b></td></tr><tr><td>*</td><td>1.2.840.113747.20080222.104120739293836151289903631439818.1.0</td><td>urn:oid:1.2.840.10008.5.1.4.1.1.11.1 (Details: urn:ietf:rfc:3986 code urn:oid:1.2.840.10008.5.1.4.1.1.11.1 = 'urn:oid:1.2.840.10008.5.1.4.1.1.11.1', stated as 'null')</td></tr></table></div>" ];fhir:Provenance.target [fhir:ImagingSelection.identifier [ fhir:index 0;fhir:link <http://hl7.org/fhir/MolecularSequence/example-pgx-1>; fhir:Reference.reference [ fhir:value "MolecularSequence/example-pgx-1" ]fhir:Identifier.system [ fhir:value "urn:dicom:uid" ]; fhir:Identifier.value [ fhir:value "urn:oid:1.2.840.113747.20080222.104120739293836151163903631439818.2.1" ] ];fhir:Provenance.occurredPeriod [ fhir:Period.start [ fhir:value "2016-11-30"^^xsd:date ]fhir:ImagingSelection.status [ fhir:value "available"]; fhir:ImagingSelection.subject [ fhir:Reference.type [ fhir:value "Patient" ]; fhir:Reference.identifier [ fhir:Identifier.system [ fhir:value "https://fhirhospital.org" ]; fhir:Identifier.value [ fhir:value "WMQVWGBPNPQHAWCO" ] ] ];fhir:Provenance.recorded [ fhir:value "2016-12-01T08:12:14+10:00"^^xsd:dateTime]; fhir:Provenance.reason [ fhir:index 0; fhir:CodeableConcept.text [ fhir:value "profiling Short Tandem Repeats (STRs) from high throughput sequencing data." ]fhir:ImagingSelection.code [ fhir:CodeableConcept.text [ fhir:value "Referenced DICOM Grayscale Softcopy Presentation State" ] ];fhir:Provenance.agent [fhir:ImagingSelection.studyUid [ fhir:value "1.2.840.113747.20080222.104120739293836153163903631439818"]; fhir:ImagingSelection.derivedFrom [ fhir:index 0;fhir:Provenance.agent.type [ fhir:CodeableConcept.coding [ fhir:index 0; fhir:Coding.system [ fhir:value "http://terminology.hl7.org/CodeSystem/v3-ParticipationType" ]; fhir:Coding.code [ fhir:value "AUT" ] ] ]; fhir:Provenance.agent.who [ fhir:link <http://hl7.org/fhir/Patient/example>; fhir:Reference.reference [ fhir:value "Patient/example" ]fhir:Reference.type [ fhir:value "ImagingStudy" ]; fhir:Reference.identifier [ fhir:Identifier.system [ fhir:value "urn:dicom:uid" ]; fhir:Identifier.value [ fhir:value "urn:oid:1.2.840.113747.20080222.104120739291289003163903631439818" ] ] ];fhir:Provenance.entity [fhir:ImagingSelection.seriesUid [ fhir:value "1.2.840.113747.20080222.104120739293836151283903631439818.1"]; fhir:ImagingSelection.frameOfReferenceUid [ fhir:value "1.2.840.113747.20080222.104120739293289003163903631439818.0"]; fhir:ImagingSelection.focus [ fhir:index 0;fhir:Provenance.entity.role [ fhir:value "source" ]; fhir:Provenance.entity.what [ fhir:Reference.identifier [ fhir:Identifier.type [ fhir:CodeableConcept.coding [ fhir:index 0; fhir:Coding.system [ fhir:value "https://github.com/common-workflow-language/workflows" ]; fhir:Coding.code [ fhir:value "CWL" ]; fhir:Coding.display [ fhir:value "lobSTR" ] ] ]; fhir:Identifier.value [ fhir:value "https://github.com/common-workflow-language/workflows/blob/master/workflows/lobSTR/lobSTR-workflow.cwl" ] ]fhir:Reference.reference [ fhir:value "ImagingSelection/example-basic-image-selection" ] ]; fhir:ImagingSelection.instance [ fhir:index 0; fhir:ImagingSelection.instance.uid [ fhir:value "1.2.840.113747.20080222.104120739293836151289903631439818.1.0" ]; fhir:ImagingSelection.instance.sopClass [ fhir:Coding.system [ fhir:value "urn:ietf:rfc:3986" ]; fhir:Coding.code [ fhir:value "urn:oid:1.2.840.10008.5.1.4.1.1.11.1" ] ]] . <http://hl7.org/fhir/MolecularSequence/example-pgx-1> a fhir:MolecularSequence . <http://hl7.org/fhir/Patient/example> a fhir:Patient .]] . # - ontology header ------------------------------------------------------------<http://hl7.org/fhir/Provenance/example-cwl.ttl> a owl:Ontology; owl:imports fhir:fhir.ttl; owl:versionIRI <http://build.fhir.org/Provenance/example-cwl.ttl> .[a owl:Ontology; owl:imports fhir:fhir.ttl] . # -------------------------------------------------------------------------------------
Usage note: every effort has been made to ensure that the examples are correct and useful, but they are not a normative part of the specification.
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