Release 4 5 Ballot

This page is part of the FHIR Specification (v4.0.1: R4 (v5.0.0-ballot: R5 Ballot - Mixed Normative and STU see ballot notes ) in it's permanent home (it will always be available at this URL). ). The current version which supercedes this version is 5.0.0 . For a full list of available versions, see the Directory of published versions . Page versions: R4B R4 R3

Valueset-chromosome-human.json

Example GenomicStudy/genomicFile3 (JSON)

Vocabulary Clinical Genomics Work Group Maturity Level : N/A Standards Status : Informative Compartments : Patient

Raw JSON ( canonical form + also see JSON Format Specification )

Definition for Value Setchromosome-human DocumentReference - Genomic File 3

{
  "resourceType" : "ValueSet",
  "id" : "chromosome-human",
  "meta" : {
    "lastUpdated" : "2019-11-01T09:29:23.356+11:00",
    "profile" : ["http://hl7.org/fhir/StructureDefinition/shareablevalueset"]
  },
  "text" : {
    "status" : "generated",
    "div" : "<div>!-- Snipped for Brevity --></div>"
  },
  "extension" : [{
    "url" : "http://hl7.org/fhir/StructureDefinition/structuredefinition-wg",
    "valueCode" : "cg"

  "resourceType": "DocumentReference",
  "id": "genomicFile3",
  "text": {
    "status": "generated",
    "div": "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Generated Narrative</b></p><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\">Resource &quot;genomicFile3&quot; </p></div><p><b>identifier</b>: id: 11113</p><p><b>status</b>: current</p><p><b>docStatus</b>: preliminary</p><p><b>subject</b>: <a href=\"Patient-denovoFather.html\">Patient/denovoFather: John Doe</a> &quot; DOE&quot;</p><p><b>description</b>: A sample Document Reference instance representing a generic genomic file that may ber used as input or output of a genomic analysis pipeline.</p><p><b>securityLabel</b>: Restricted <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"http://terminology.hl7.org/3.1.0/CodeSystem-v3-Confidentiality.html\">Confidentiality</a>#R)</span></p><blockquote><p><b>content</b></p></blockquote></div>"

  },
  {
    "url" : "http://hl7.org/fhir/StructureDefinition/structuredefinition-standards-status",
    "valueCode" : "draft"

  "identifier": [
    {
      "system": "http://www.somesystemabc.net/identifiers/files",
      "value": "11113"
    }
  ],
  "status": "current",
  "docStatus": "preliminary",
  "subject": {
    "reference": "Patient/denovoFather",
    "display": "John Doe"

  },
  {
    "url" : "http://hl7.org/fhir/StructureDefinition/structuredefinition-fmm",
    "valueInteger" : 1
  }],
  "url" : "http://hl7.org/fhir/ValueSet/chromosome-human",
  "identifier" : [{
    "system" : "urn:ietf:rfc:3986",
    "value" : "urn:oid:2.16.840.1.113883.4.642.3.224"
  }],
  "version" : "4.0.1",
  "name" : "chromosome-human",
  "title" : "chromosome-human",
  "status" : "draft",
  "experimental" : false,
  "date" : "2019-11-01T09:29:23+11:00",
  "publisher" : "HL7 (FHIR Project)",
  "contact" : [{
    "telecom" : [{
      "system" : "url",
      "value" : "http://hl7.org/fhir"
    },

  "description": "A sample Document Reference instance representing a generic genomic file that may ber used as input or output of a genomic analysis pipeline.",
  "securityLabel": [

    {
      "system" : "email",
      "value" : "fhir@lists.hl7.org"
    }]
  }],
  "description" : "Chromosome number for human.",
  "immutable" : true,
  "compose" : {
    "include" : [{
      "system" : "http://terminology.hl7.org/CodeSystem/chromosome-human"
    }]
  }

      "coding": [
        {
          "system": "http://terminology.hl7.org/CodeSystem/v3-Confidentiality",
          "code": "R",
          "display": "Restricted"
        }
      ]
    }
  ],
  "content": [
    {
      "attachment": {
        "url": "http://www.somesystemabc.net/identifiers/files/11113",
        "title": "Sample Genomic File",
        "creation": "2021-01-01T01:01:01+01:00"
      }
    }
  ]

}

Usage note: every effort has been made to ensure that the examples are correct and useful, but they are not a normative part of the specification.