Release 4 5 Preview #1

This page is part of the FHIR Specification (v4.0.1: R4 - Mixed Normative and STU ) in it's permanent home (it will always be available at this URL). (v4.2.0: R5 Preview #1). The current version which supercedes this version is 5.0.0 . For a full list of available versions, see the Directory of published versions . Page versions: R4B R4 R3

Sequence-graphic-example-1.xml

Clinical Genomics Work Group Maturity Level : N/A Standards Status : Informative Compartments : Patient

Raw XML ( canonical form + also see XML Format Specification )

Jump past Narrative

MolecularSequence Graphic example-1 (id = "graphic-example-1") 

<?xml version="1.0" encoding="UTF-8"?>

<MolecularSequence xmlns="http://hl7.org/fhir">
    <id value="graphic-example-1"/> 
    <text> <status value="generated"/> <div xmlns="http://www.w3.org/1999/xhtml"><p> <b> Generated Narrative with Details</b> </p> <p> <b> id</b> : graphic-example-1</p> <p> <b> type</b> : dna</p> <p> <b> coordinateSystem</b> : 0</p> <h3> ReferenceSeqs</h3> <table> <tr> <td> -</td> <td> <b> ReferenceSeqId</b> </td> <td> <b> Strand</b> </td> <td> <b> WindowStart</b> </td> <td> <b> WindowEnd</b> </td> </tr> <tr> <td> *</td> <td> NC_000002.12 <span> (Details : {http://www.ncbi.nlm.nih.gov/nuccore code 'NC_000002.12' = 'NC_000002.12)</span> </td> <td> watson</td> <td> 128273724</td> <td> 128273732</td> </tr> </table> <h3> Variants</h3> <table> <tr> <td> -</td> <td> <b> Start</b> </td> <td> <b> End</b> </td> <td> <b> ObservedAllele</b> </td> <td> <b> ReferenceAllele</b> </td> <td> <b> Cigar</b> </td> </tr> <tr> <td> *</td> <td> 128273725</td> <td> 128273726</td> <td> G</td> <td> T</td> <td> 1M</td> </tr> </table> <p> <b> pointer</b> : <a> MolecularSequence/graphic-example-2</a> </p> </div> </text> <type value="dna"/> 
    <coordinateSystem value="0"/> 
    <referenceSeq> 
        <referenceSeqId> 
          <coding> 
            <system value="http://www.ncbi.nlm.nih.gov/nuccore"/> 
            <code value="NC_000002.12"/> 
          </coding> 
        </referenceSeqId> 
        <strand value="watson"/> 
        <windowStart value="128273724"/> 
        <windowEnd value="128273732"/> 
    </referenceSeq> 
    <variant> 
        <start value="128273725"/> 
        <end value="128273726"/> 
        <observedAllele value="G"/> 
        <referenceAllele value="T"/> 
        <cigar value="1M"/> 
    </variant> 
    <pointer> 
        

        <reference value="MolecularSequence/graphic-example-2"/> 
    </pointer> 


</

MolecularSequence

>

Usage note: every effort has been made to ensure that the examples are correct and useful, but they are not a normative part of the specification.