Provenance-example-cwl.xml

Provenance example for cwl workflow project (id = "example-cwl")

<?xml version="1.0" encoding="UTF-8"?>


<Provenance xmlns="http://hl7.org/fhir">
  <id value="example-cwl"/> 
  : profiling Short Tandem Repeats (STRs) from high throughput sequencing data. (Details:

  <text> 
    <status value="generated"/> 
    <div xmlns="http://www.w3.org/1999/xhtml">
      <p> 
        <b> Generated Narrative with Details</b> 
      </p> <p> 
        <b> id</b> : cwl-example</p> <p> 
        <b> target</b> : <a href="http://build.fhir.org/sequence-example-pgx-1.html">Sequence/example-pgx-1</a> 
      </p> <p> 
        <b> period</b> : Nov 30, 2016 --&gt; (ongoing)</p> <p> 
        <b> recorded</b> : Dec 1, 2016 8:12:14 AM</p> <p> 
        <b> reason</b> : profiling Short Tandem Repeats (STRs) from high throughput sequencing data. (Details:
         [not stated] code null = 'null', stated as 'profiling Short Tandem Repeats (STRs)
         from
         high throughput sequencing data.')Author (Details: http://hl7.org/fhir/provenance-participant-role code author = 'Author',
             stated as 'null')https://github.com/common-workflow-language/workflows/blob/master/workflows/lobSTR/lobSTR-workflow.c
            wl

         high throughput sequencing data.')</p> 
      <h3> Agents</h3> 
      <table> 
        <tr> 
          <td> -</td> 
          <td> 
            <b> Role</b> 
          </td> 
          <td> 
            <b> Who</b> 
          </td> 
        </tr> 
        <tr> 
          <td> *</td> 
          <td> Author (Details: http://hl7.org/fhir/provenance-participant-role code author = 'Author',

             stated as 'null')</td> 
          <td> 
            <a href="http://build.fhir.org/patient-example.html">Patient/example</a> 
          </td> 
        </tr> 
      </table> 
      <h3> Entities</h3> 
      <table> 
        <tr> 
          <td> -</td> 
          <td> 
            <b> Role</b> 
          </td> 
          <td> 
            <b> Reference</b> 
          </td> 
        </tr> 
        <tr> 
          <td> *</td> 
          <td> source</td> 
          <td> 
            <a href="https://github.com/common-workflow-language/workflows/blob/master/workflows/lobSTR/lobSTR-workflow.c

            wl">CWL example</a> 
          </td> 
        </tr> 
      </table> 
    </div> 
  </text> 
  <target> 
    <reference value="Sequence/example-pgx-1"/> 
  </target> 
  
    
  

  <occurredPeriod> 
    <start value="2016-11-30"/> 
  </occurredPeriod> 
  <recorded value="2016-12-01T08:12:14+10:00"/> 

  <reason> 
      

    <text value="profiling Short Tandem Repeats (STRs) from high throughput sequencing data."/> 
  </reason> 
  
    
      
        

  <agent>  
    <type> 
      <coding> 
        <system value="http://terminology.hl7.org/CodeSystem/v3-ParticipationType"/> 
        <code value="AUT"/> 
      
    
    
      
    

      </coding> 
    </type> 
    <who> 
      <reference value="Patient/example"/> 
    </who> 
  </agent> 


  
  
  <!--  

  <entity> 
    <role value="source"/> 
    <what> 
      <identifier> 
        <!--  
    <reference value="https://github.com/common-workflow-language/workflows/blob/master/workflows/lo
      bSTR/lobSTR-workflow.cwl"/>

        bSTR/lobSTR-workflow.cwl"/>

  removed this as it throws warnings in build. Could not figure out what to replace it
       with.

         with.

    -->
      
        
       
           
           
        
      
      https://github.com/common-workflow-language/workflows/blob/master/workflows/lobSTR/lobSTR-workflow.c
      wl
  


        <type> 
          <coding> 
            <system value="https://github.com/common-workflow-language/workflows"/> 
            <code value="CWL"/> 
            <display value="lobSTR"/> 
          </coding> 
        </type> 
        <value value="https://github.com/common-workflow-language/workflows/blob/master/workflows/lobSTR/lobSTR-workflow.c
        wl"/> 
      </identifier> 
    </what> 
  </entity> 


</

Provenance

>