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Sequence-graphic-example-1.json

Example ValueSet/designation-use (JSON)

Maturity Level : N/A
Clinical Genomics Responsible Owner: Terminology Infrastructure Work Group Standards Status : Informative Compartments : Patient

Raw JSON ( canonical form + also see JSON Format Specification )

MolecularSequence Graphic example-1 Definition for Value SetDesignation Use

{
  "resourceType": "MolecularSequence",
  "id": "graphic-example-1",
  "text": {
    "status": "generated",
    "div": "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Generated Narrative with Details</b></p><p><b>id</b>: graphic-example-1</p><p><b>type</b>: dna</p><p><b>coordinateSystem</b>: 0</p><h3>ReferenceSeqs</h3><table><tr><td>-</td><td><b>ReferenceSeqId</b></td><td><b>Strand</b></td><td><b>WindowStart</b></td><td><b>WindowEnd</b></td></tr><tr><td>*</td><td>NC_000002.12 <span>(Details : {http://www.ncbi.nlm.nih.gov/nuccore code 'NC_000002.12' = 'NC_000002.12)</span></td><td>watson</td><td>128273724</td><td>128273732</td></tr></table><h3>Variants</h3><table><tr><td>-</td><td><b>Start</b></td><td><b>End</b></td><td><b>ObservedAllele</b></td><td><b>ReferenceAllele</b></td><td><b>Cigar</b></td></tr><tr><td>*</td><td>128273725</td><td>128273726</td><td>G</td><td>T</td><td>1M</td></tr></table><p><b>pointer</b>: <a>MolecularSequence/graphic-example-2</a></p></div>"

  "resourceType" : "ValueSet",
  "id" : "designation-use",
  "meta" : {
    "lastUpdated" : "2025-12-17T09:50:17.012+00:00"

  },
  "type": "dna",
  "coordinateSystem": 0,
  "referenceSeq": {
    "referenceSeqId": {
      "coding": [
        {
          "system": "http://www.ncbi.nlm.nih.gov/nuccore",
          "code": "NC_000002.12"
        }
      ]
    },
    "strand": "watson",
    "windowStart": 128273724,
    "windowEnd": 128273732

  "text" : {
    "status" : "generated",
    "div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p class=\"res-header-id\"><b>Generated Narrative: ValueSet designation-use</b></p><a name=\"designation-use\"> </a><a name=\"hcdesignation-use\"> </a><ul><li>Include these codes as defined in <a href=\"http://www.snomed.org/\"><code>http://snomed.info/sct</code></a><span title=\"Version is not explicitly stated. No matching Code System found\"> version Not Stated (use latest from terminology server)</span><table class=\"none\"><tr><td style=\"white-space:nowrap\"><b>Code</b></td><td><b>Display</b></td></tr><tr><td><a href=\"http://snomed.info/id/900000000000003001\">900000000000003001</a></td><td style=\"color: #cccccc\">Fully specified name</td></tr><tr><td><a href=\"http://snomed.info/id/900000000000013009\">900000000000013009</a></td><td style=\"color: #cccccc\">Synonym (core metadata concept)</td></tr></table></li></ul></div>"

  },
  "variant": [
    {
      "start": 128273725,
      "end": 128273726,
      "observedAllele": "G",
      "referenceAllele": "T",
      "cigar": "1M"
    }
  ],
  "pointer": [
    {
      "reference": "MolecularSequence/graphic-example-2"
    }
  ]

  "extension" : [{
    "url" : "http://hl7.org/fhir/StructureDefinition/structuredefinition-wg",
    "valueCode" : "vocab"
  },
  {
    "url" : "http://hl7.org/fhir/StructureDefinition/structuredefinition-standards-status",
    "valueCode" : "normative"
  },
  {
    "url" : "http://hl7.org/fhir/StructureDefinition/structuredefinition-fmm",
    "valueInteger" : 5
  }],
  "url" : "http://hl7.org/fhir/ValueSet/designation-use",
  "identifier" : [{
    "system" : "urn:ietf:rfc:3986",
    "value" : "urn:oid:2.16.840.1.113883.4.642.3.264"
  },
  {
    "use" : "old",
    "system" : "urn:ietf:rfc:3986",
    "value" : "urn:oid:2.16.840.1.113883.4.642.3.259"
  },
  {
    "use" : "old",
    "system" : "urn:ietf:rfc:3986",
    "value" : "urn:oid:2.16.840.1.113883.4.642.2.281"
  }],
  "version" : "6.0.0-ballot3",
  "name" : "DesignationUse",
  "title" : "Designation Use",
  "status" : "active",
  "experimental" : false,
  "publisher" : "HL7 International / Terminology Infrastructure",
  "contact" : [{
    "telecom" : [{
      "system" : "url",
      "value" : "http://hl7.org/fhir"
    }]
  },
  {
    "telecom" : [{
      "system" : "url",
      "value" : "http://www.hl7.org/Special/committees/Vocab/index.cfm"
    }]
  }],
  "description" : "Details of how a designation would be used",
  "jurisdiction" : [{
    "coding" : [{
      "system" : "http://unstats.un.org/unsd/methods/m49/m49.htm",
      "code" : "001",
      "display" : "World"
    }]
  }],
  "copyright" : "This resource includes content from SNOMED Clinical Terms® (SNOMED CT®) which is copyright of the International Health Terminology Standards Development Organisation (IHTSDO). Implementers of these specifications must have the appropriate SNOMED CT Affiliate license - for more information contact http://www.snomed.org/snomed-ct/get-snomed-ct or info@snomed.org",
  "compose" : {
    "include" : [{
      "system" : "http://snomed.info/sct",
      "concept" : [{
        "code" : "900000000000003001"
      },
      {
        "code" : "900000000000013009"
      }]
    }]
  }

}

Usage note: every effort has been made to ensure that the examples are correct and useful, but they are not a normative part of the specification.