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Example Specimen/pooled-serum (Turtle)

Maturity Level : N/A
Responsible Owner: Orders and Observations Work Group Standards Status : Informative Compartments : Device , Group , Patient , Practitioner

Raw Turtle (+ also see Turtle/RDF Format Specification )

Pooled serum sample 

@prefix fhir: <http://hl7.org/fhir/> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .

@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .

# - resource -------------------------------------------------------------------

[a fhir:Specimen ;

#   
# An example of a pooled serum sample used in the screening observation for Mycoplasmal Pneumonia in Pigs
#(Enzootic pneumonia).  Many thanks to Veterinary Diagnostic Laboratory Iowa State University for the data. 

<http://hl7.org/fhir/Specimen/pooled-serum> a fhir:Specimen ;

  fhir:nodeRole fhir:treeRoot ;
  fhir:id [ fhir:v "pooled-serum"] ; # 
  fhir:text [
     fhir:status [ fhir:v "generated" ] ;
     fhir:div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Generated Narrative: Specimen</b><a name=\"pooled-serum\"> </a></p><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\">Resource Specimen &quot;pooled-serum&quot; </p></div><p><b>accessionIdentifier</b>: <span title=\"   the accessionId assigned by the lab \">id: 20171120-1234</span></p><p><b>type</b>: <span title=\"  Pooled serum sample from 30 individuals in the herd- no Snomed Code for this - used a made up local code \">Pooled serum sample <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (vdl#Serum sample, pooled &quot;Serum sample, pooled&quot;)</span></span></p><p><b>subject</b>: <span title=\"  subject is a herd of breeding sows  \"><a href=\"group-example-herd1.html\">Group/herd1</a> &quot;Breeding herd&quot;</span></p><p><b>combined</b>: pooled</p><h3>Collections</h3><table class=\"grid\"><tr><td>-</td><td><b>Collector</b></td><td><b>Collected[x]</b></td></tr><tr><td>*</td><td><span>: James Herriot, FRCVS</span></td><td>2017-11-14</td></tr></table><h3>Containers</h3><table class=\"grid\"><tr><td>-</td><td><b>Device</b></td></tr><tr><td>*</td><td><a href=\"device-example-specimen-container-red-top-vacutainer.html\">Device/device-example-specimen-container-red-top-vacutainer</a></td></tr></table><p><b>note</b>: Pooled serum sample from 30 individuals</p></div>"
  ] ; #     the accessionId assigned by the lab  
  fhir:accessionIdentifier [
     fhir:system [ fhir:v "https://vetmed.iastate.edu/vdl"^^xsd:anyURI ] ;

  fhir:identifier ( [
     fhir:type [
       fhir:coding ( [
         fhir:system [
           fhir:v "http://terminology.hl7.org/CodeSystem/v2-0203"^^xsd:anyURI ;
           fhir:l <http://terminology.hl7.org/CodeSystem/v2-0203>
         ] ;
         fhir:code [ fhir:v "ACSN" ] ;
         fhir:display [ fhir:v "Accession ID" ]
       ] )
     ] ;
     fhir:system [
       fhir:v "https://vetmed.iastate.edu/vdl"^^xsd:anyURI ;
       fhir:l <https://vetmed.iastate.edu/vdl>
     ] ;

     fhir:value [ fhir:v "20171120-1234" ]
  ] ; # 

  ] [
     fhir:type [
       fhir:coding ( [
         fhir:system [
           fhir:v "http://terminology.hl7.org/CodeSystem/v2-0203"^^xsd:anyURI ;
           fhir:l <http://terminology.hl7.org/CodeSystem/v2-0203>
         ] ;
         fhir:code [ fhir:v "ACSN" ] ;
         fhir:display [ fhir:v "Accession ID" ]
       ] )
     ] ;
     fhir:system [
       fhir:v "https://vetmed.iastate.edu/vdl"^^xsd:anyURI ;
       fhir:l <https://vetmed.iastate.edu/vdl>
     ] ;
     fhir:value [ fhir:v "20171120-1234" ]
  ] ) ; #    the accessionId assigned by the lab 

  fhir:type [
     fhir:coding ( [
       fhir:system [ fhir:v "https://vetmed.iastate.edu/vdl"^^xsd:anyURI ] ;

       fhir:system [
         fhir:v "https://vetmed.iastate.edu/vdl"^^xsd:anyURI ;
         fhir:l <https://vetmed.iastate.edu/vdl>
       ] ;

       fhir:code [ fhir:v "Serum sample, pooled" ] ;
       fhir:display [ fhir:v "Serum sample, pooled" ]
     ] ) ;
     fhir:text [ fhir:v "Pooled serum sample" ]
  ] ; #    Pooled serum sample from 30 individuals in the herd- no Snomed Code for this - used a made up local code  

  ] ; #   Pooled serum sample from 30 individuals in the herd- no Snomed Code for this - used a made up local code 

  fhir:subject [
     fhir:l <http://hl7.org/fhir/Group/herd1> ;

     fhir:reference [ fhir:v "Group/herd1" ]
  ] ; #    subject is a herd of breeding sows   

  ] ; #   subject is a herd of breeding sows  

  fhir:combined [ fhir:v "pooled"] ; # 
  fhir:collection [
     fhir:collector [
       fhir:display [ fhir:v "James Herriot, FRCVS" ]
     ] ;
     fhir:collected [ fhir:v "2017-11-14"^^xsd:date ]
  ] ; # 
  fhir:container ( [
     fhir:device [
       fhir:reference [ fhir:v "Device/device-example-specimen-container-red-top-vacutainer" ]

     fhir:collected [
       a fhir:DateTime ;
       fhir:v "2017-11-14"^^xsd:date

     ]
  ] ) ; # 

  ] ; # 
  fhir:container ( [] ) ; # 

  fhir:note ( [
     fhir:text [ fhir:v "Pooled serum sample from 30 individuals" ]
  ] )] . # 

  ] ) . # 

<http://hl7.org/fhir/Group/herd1> a fhir:Group .


# -------------------------------------------------------------------------------------

Usage note: every effort has been made to ensure that the examples are correct and useful, but they are not a normative part of the specification.