Diagnostics
This
page
is
part
of
the
FHIR
Specification
(v3.0.2:
STU
3).
The
current
version
which
supercedes
this
version
is
5.0.0
.
For
a
full
list
Continuous
Integration
Build
of
available
versions,
see
FHIR
(will
be
incorrect/inconsistent
at
times).
See
the
Directory
of
published
versions
.
Page
versions:
R5
R4B
R4
R3
R2
| Responsible Owner: Orders and Observations Work Group |
|
Compartments : Device , Group , Patient , Practitioner |
Raw JSON ( canonical form + also see JSON Format Specification )
Bacterial Isolate from Stool sample
{
"resourceType": "Specimen",
"id": "isolate",
"text": {
"status": "generated",
"div": "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Generated Narrative with Details</b></p><p><b>id</b>: isolate</p><p><b>contained</b>: </p><p><b>accessionIdentifier</b>: X352356-ISO1</p><p><b>status</b>: available</p><p><b>type</b>: Bacterial isolate specimen <span>(Details : {SNOMED CT code '429951000124103' = 'Bacterial isolate specimen (specimen)', given as 'Bacterial isolate specimen'})</span></p><p><b>subject</b>: <a>Patient/example</a></p><p><b>receivedTime</b>: 18/08/2015 7:03:00 AM</p><p><b>parent</b>: id: stool; X352356; status: unavailable; Stool specimen <span>(Details : {SNOMED CT code '119339001' = 'Stool specimen', given as 'Stool specimen'})</span>; ????; receivedTime: 16/08/2015 7:03:00 AM</p><h3>Collections</h3><table><tr><td>-</td><td><b>Collector</b></td><td><b>Collected[x]</b></td><td><b>Method</b></td></tr><tr><td>*</td><td><a>Practitioner/f202</a></td><td>16/08/2015 7:03:00 AM</td><td>Plates, Blood Agar <span>(Details : {http://hl7.org/fhir/v2/0488 code 'BAP' = 'Plates, Blood Agar)</span></td></tr></table><p><b>note</b>: Patient dropped off specimen</p></div>"
},
"contained": [
{
"resourceType": "Specimen",
"id": "stool",
"accessionIdentifier": {
"system": "http://lab.acme.org/specimens/2015",
"value": "X352356"
"resourceType" : "Specimen",
"id" : "isolate",
"contained" : [{
"resourceType" : "Specimen",
"id" : "stool",
"identifier" : [{
"type" : {
"coding" : [{
"system" : "http://terminology.hl7.org/CodeSystem/v2-0203",
"code" : "ACSN",
"display" : "Accession ID"
}]
},
"status": "unavailable",
"type": {
"coding": [
{
"system": "http://snomed.info/sct",
"code": "119339001",
"display": "Stool specimen"
}
]
"system" : "http://lab.acme.org/specimens/2015",
"value" : "X352356"
},
{
"type" : {
"coding" : [{
"system" : "http://terminology.hl7.org/CodeSystem/v2-0203",
"code" : "ACSN",
"display" : "Accession ID"
}]
},
"subject": {
"reference": "Patient/example"
"system" : "http://lab.acme.org/specimens/2015",
"value" : "X352356"
}],
"status" : "unavailable",
"type" : {
"coding" : [{
"system" : "http://snomed.info/sct",
"code" : "119339001",
"display" : "Stool specimen"
}]
},
"subject" : {
"reference" : "Patient/example"
},
"receivedTime" : "2015-08-16T07:03:00Z",
"collection" : {
"collector" : {
"display" : "Patient"
},
"receivedTime": "2015-08-16T07:03:00Z",
"collection": {
"collector": {
"display": "Patient"
},
"collectedDateTime": "2011-08-16T06:15:00Z",
"method": {
"coding": [
{
"system": "http://hl7.org/fhir/v2/0488",
"code": "LNV"
}
]
}
"collectedDateTime" : "2011-08-16T06:15:00Z",
"method" : {
"coding" : [{
"system" : "http://terminology.hl7.org/CodeSystem/v2-0488",
"code" : "LNV"
}]
}
}
],
"accessionIdentifier": {
"system": "http://lab.acme.org/specimens/2011",
"value": "X352356-ISO1"
}],
"identifier" : [{
"type" : {
"coding" : [{
"system" : "http://terminology.hl7.org/CodeSystem/v2-0203",
"code" : "ACSN",
"display" : "Accession ID"
}]
},
"system" : "http://lab.acme.org/specimens/2011",
"value" : "X352356-ISO1"
},
"status": "available",
"type": {
"coding": [
{
"system": "http://snomed.info/sct",
"code": "429951000124103",
"display": "Bacterial isolate specimen"
}
]
{
"type" : {
"coding" : [{
"system" : "http://terminology.hl7.org/CodeSystem/v2-0203",
"code" : "ACSN",
"display" : "Accession ID"
}]
},
"system" : "http://lab.acme.org/specimens/2011",
"value" : "X352356-ISO1"
}],
"status" : "available",
"type" : {
"coding" : [{
"system" : "http://snomed.info/sct",
"code" : "119303007",
"display" : "Microbial isolate specimen"
}],
"text" : "Bacterial isolate specimen"
},
"subject": {
"reference": "Patient/example"
"subject" : {
"reference" : "Patient/example"
},
"receivedTime": "2015-08-18T07:03:00Z",
"parent": [
{
"reference": "#stool"
}
],
"collection": {
"collector": {
"reference": "Practitioner/f202"
"receivedTime" : "2015-08-18T07:03:00Z",
"parent" : [{
"reference" : "#stool"
}],
"role" : [{
"coding" : [{
"code" : "p",
"display" : "Patient"
}]
}],
"collection" : {
"collector" : {
"reference" : "Practitioner/f202"
},
"collectedDateTime": "2015-08-16T07:03:00Z",
"method": {
"coding": [
{
"system": "http://hl7.org/fhir/v2/0488",
"code": "BAP"
}
]
"collectedDateTime" : "2015-08-16T07:03:00Z",
"method" : {
"coding" : [{
"system" : "http://terminology.hl7.org/CodeSystem/v2-0488",
"code" : "BAP"
}]
}
},
"note": [
{
"text": "Patient dropped off specimen"
}
]
"note" : [{
"text" : "Patient dropped off specimen"
}]
}
Usage note: every effort has been made to ensure that the examples are correct and useful, but they are not a normative part of the specification.
FHIR
®©
HL7.org
2011+.
FHIR
Release
3
(STU;
v3.0.2-11200)
R6
hl7.fhir.core#6.0.0-ballot3
generated
on
Thurs,
Oct
24,
2019
11:53+1100.
QA
Page
Thu,
Nov
13,
2025
11:16+0000.
Links:
Search
|
Version
History
|
Table
of
Contents
|
Credits
Glossary
|
QA
|
Compare
to
DSTU2
R4
|
Compare
to
R5
|
Compare
to
Last
Ballot
|
|
Propose
a
change