Release 4 FHIR CI-Build

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Coord-0base-example

Example Encounter/f202 (XML)

Maturity Level : N/A * ACGTAGTC watson 0 8
Clinical Genomics Responsible Owner: Patient Administration Work Group Standards Status : Informative Compartments : Encounter , Group , Patient This is the narrative for the resource. See also the XML , JSON or Turtle Practitioner , RelatedPerson format. This example conforms to the profile MolecularSequence . Generated Narrative with Details id : coord-0-base type : dna coordinateSystem : 0 ReferenceSeqs - ReferenceSeqString Strand WindowStart WindowEnd
    variant start : 2 end : 2 observedAllele : ATG referenceAllele : - cigar : 3I
  • Narrative
  • variant XML
  • start : 4 JSON
    • end : 5
  • TTL observedAllele : T

referenceAllele : A Raw XML ( canonical form + also see XML Format Specification )

cigar : 1M Real-world encounter example (with primaryDiagnosis extension added) (id = "f202")

variant 
<?xml version="1.0" encoding="UTF-8"?>

<!--  No admission was deemed necessary  --><Encounter xmlns="http://hl7.org/fhir">  <id value="f202"/>   <identifier>     <use value="temp"/>     <!--   0..1 The use of this identifier   -->    <value value="Encounter_Roel_20130128"/>   </identifier>   <status value="completed"/>   <!--  Encounter has finished  -->  <class>     <coding>       <system value="http://terminology.hl7.org/CodeSystem/v3-ActCode"/>       <code value="AMB"/>       <!--   outpatient encounter for chemotherapy   -->      <display value="ambulatory"/>     </coding>   </class>   <priority>     <!--  Urgent priority, because of complications  -->    <coding>       <system value="http://snomed.info/sct"/>       <code value="103391001"/>       <display value="Urgent"/>     </coding>   </priority>   <type>     <coding>       <system value="http://snomed.info/sct"/>       <code value="367336001"/>       <display value="Chemotherapy"/>     </coding>   </type>   <subject>     <reference value="Patient/f201"/>     <display value="Roel"/>   </subject>   <serviceProvider>     <reference value="Organization/f201"/>   </serviceProvider>   <participant>     <actor>       <reference value="Practitioner/f201"/>     </actor>   </participant>   <length>     <value value="56"/>     <unit value="minutes"/>     <system value="http://unitsofmeasure.org"/>     <code value="min"/>   </length>   <reason>     <value>       <concept>         <text value="The patient is treated for a tumor."/>       </concept>     </value>   </reason>   <diagnosis>     <condition>       <concept>         <text value="Complications from Roel's TPF chemotherapy on January 28th, 2013"/>       </concept>     </condition>     <use>       <coding>         <system value="http://terminology.hl7.org/CodeSystem/diagnosis-role"/>         <code value="AD"/>         <display value="Admission diagnosis"/>       </coding>     </use>   </diagnosis>   <!--   Example of a principal diagnosis with role=CC and rank=1  -->  <diagnosis>     <condition>       <concept>         <text value="The patient is treated for a tumor"/>       </concept>     </condition>     <use>       <coding>         <system value="http://terminology.hl7.org/CodeSystem/diagnosis-role"/>         <code value="CC"/>         <display value="Chief complaint"/>       </coding>     </use>   </diagnosis> 

start
:
6
end
:
7
observedAllele
:
-
referenceAllele
:
T
cigar
:
1D


</

Encounter

>

observedSeq
:
ACATGGTAGC
   

Usage note: every effort has been made to ensure that the examples are correct and useful, but they are not a normative part of the specification.