R6 Ballot (3rd Draft) FHIR CI-Build

This page is part of the FHIR Specification v6.0.0-ballot3: Release 6 Ballot (3rd Draft) (see Ballot Notes ). The current version is 5.0.0 . For a full list Continuous Integration Build of available versions, see FHIR (will be incorrect/inconsistent at times).
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4.3.2.435 4.3.2.392 CodeSystem http://hl7.org/fhir/genomicstudy-dataformat

Responsible Owner: Clinical Genomics icon Work Group   Maturity Level : 1 Trial Use Use Context : Country: World, Not yet ready for Production use
Official URL : http://hl7.org/fhir/genomicstudy-dataformat Version : 6.0.0-ballot3
active as of 2022-08-18 2022-08-17 Computable Name : GenomicStudyDataFormat
Flags : Experimental, CaseSensitive, Complete. All codes ValueSet: Genomic Study Data Format OID : 2.16.840.1.113883.4.642.4.1978

"This Code system is used in the following FHIR core-defined or referenced value sets:

4.3.2.435.1 4.3.2.392.1 Definition

The data format relevant to genomics. These formats and relevant codes were pulled from Integrative Genomics Viewer Documentation icon by Broad Institute.

4.3.2.435.2 4.3.2.392.2 Content

Generated Narrative: CodeSystem genomicstudy-dataformat

Last updated: 2025-04-01T12:16:37.966+11:00 Profile: Shareable CodeSystem 2025-11-11T02:17:08.817+11:00

This case-sensitive code system http://hl7.org/fhir/genomicstudy-dataformat defines the following codes:

Code Display Copy
bam BAM btn   btn
bed BED btn   btn
bedpe BEDPE btn   btn
bedgraph BedGraph btn   btn
bigbed bigBed btn   btn
bigWig bigWig btn   btn
birdsuite-files Birdsuite-Files btn   btn
broadpeak broadPeak btn   btn
cbs CBS btn   btn
chemical-reactivity-probing-profiles Chemical-Reactivity-Probing-Profiles btn   btn
chrom-sizes chrom-sizes btn   btn
cn CN btn   btn
custom-file-formats Custom-File-Formats btn   btn
cytoband Cytoband btn   btn
fasta FASTA btn   btn
gct GCT btn   btn
cram CRAM btn   btn
genepred genePred btn   btn
gff-gtf GFF/GTF btn   btn
gistic GISTIC btn   btn
goby Goby btn   btn
gwas GWAS btn   btn
igv IGV btn   btn
loh LOH btn   btn
maf-multiple-alignment-format MAF-Multiple Alignment Format btn   btn
maf-mutation-annotation-format MAF-Mutation-Annotation-Format btn   btn
merged-bam-file Merged BAM File btn   btn
mut MUT btn   btn
narrowpeak narrowPeak btn   btn
psl PSL btn   btn
res RES btn   btn
rna-secondary-structure-formats RNA-Secondary-Structure-Formats btn   btn
sam SAM btn   btn
sample-info-attributes-file Sample-Info-Attributes-file btn   btn
seg SEG btn   btn
tdf TDF btn   btn
track-line Track Line btn   btn
type-line Type Line btn   btn
vcf VCF btn   btn
wig WIG btn   btn

 

See the full registry of code systems defined as part of FHIR.

Explanation of the columns that may appear on this page:

Level A few code lists that FHIR defines are hierarchical - each code is assigned a level. See Code System for further information.
Source The source of the definition of the code (when the value set draws in codes defined elsewhere)
Code The code (used as the code in the resource instance). If the code is in italics, this indicates that the code is not selectable ('Abstract')
Display The display (used in the display element of a Coding ). If there is no display, implementers should not simply display the code, but map the concept into their application
Definition An explanation of the meaning of the concept
Comments Additional notes about how to use the code